Open DexinYang1998 opened 5 months ago
Hi,
Thanks for your wonderful tools. In practice, I can successfully plot the tracks in Notebook, and I am wondering whether there is a way to save the current plot in PDF format.
Thanks so much for your help!
HiC_frame = HiCMat(HiC, balance = False) + \ Spacer(0.5) with highlights_locus, highlights_cebpa: bw_frame = Virtual4C(HiC, "chr7:3512000-35125000") + Title("Virtual4C") + \ Spacer(0.5) + \ BigWig(H3K27ac_bw) + MinValue(0) + Vlines(locus) + Title("H3K27ac") + \ Spacer(0.5) + \ BigWig(ATAC_bw) + MinValue(0) + Vlines(locus) + Title("ATAC") + \ Spacer(0.5) + \ BigWig(NKX2_1_bw) + MinValue(0) + Vlines(locus) + Title("Nkx2-1") + \ GTF(gtf_mm10) #frame.plot("chr7:35104964-35161193") frame = HiC_frame + bw_frame + XAxis() frame.plot("chr7:35010000-35200000")
Meanwhile, I try to use two different commands with the same genomics coordinates to save figures, but I encountered some errors.
fig = frame.plot("chr7:35010000-35200000") fig.savefig(fname= "test.pdf")
bsr = Browser(frame, reference_genome = "mm10") bsr.goto("chr7:35010000-35200000") bsr.save("test.pdf")
Hi, can you try as below:
bsr = Browser(frame, reference_genome = "mm10") bsr.goto("chr7:35010000-35200000") bsr.show() bsr.save("test.pdf")
Hi,
Thanks for your wonderful tools. In practice, I can successfully plot the tracks in Notebook, and I am wondering whether there is a way to save the current plot in PDF format.
Thanks so much for your help!
Meanwhile, I try to use two different commands with the same genomics coordinates to save figures, but I encountered some errors.