labels overlay bars in plotEnrichAdv when left x-axis limit is less than the right limit

[igumnov-daniel]

Hi! When I'm trying to create a figure with plotEnrichAdv on simplified data and left xaxis limit is less than the right xaxis limit labels overlay bars of thee graph.

Let up_go_bp_sim and down_go_bp_sim be the resultant dataframes returned by genORA function ran with up- and downregulated DEGs. Then:

1. Left limit is greater

   plotEnrichAdv(up_go_bp_sim, down_go_bp_sim,
             plot_type = "one",
             term_metric = "FoldEnrich",
             stats_metric = "p.adjust",
             xlim_left = 15, xlim_right = 20) +
   theme(legend.position = c(0.8, 0.5))

2. Right limit is greater (as in the example in the documentation) Everything is OK.

   plotEnrichAdv(up_go_bp_sim, down_go_bp_sim,
             plot_type = "one",
             term_metric = "FoldEnrich",
             stats_metric = "p.adjust",
             xlim_left = 20.1, xlim_right = 20) +  # now left border is greater than the right one
   theme(legend.position = c(0.8, 0.5))

   

ps: It also would be great to add more parameters to simGO function like cutoff etc.

pps: Thanks again for the package!

[igumnov-daniel]

Maybe it's because of that? I've changed just these two sign and now it works fine.