In the current situation, I push the commit directly to this repository. However, as I want you to know this change, I would send the pull request.
Note that Docker images with the schema version 2.1 built and pushed by Podman cause an error when pulled by Docker. It's safe to use docker to build Docker containers. See https://discuss.dockstore.org/t/1972/12.
== How to run the Docker container ==
$ make run
Then check the Cromwell.stdout.txt, and find the temporary log directory, and find the stderr file.
E.g.
$ cat /tmp/1662557576842-0/cromwell-executions/BioDivGenomics/741c0347-eb22-4fff-893b-b7ce32329eeb/call-FastK/execution/stderr | head
Partitioning 1 .fastq file into 4 parts
Determining minimizer scheme & partition for hifi_input
Estimate 2.906M 40-mers
In the current situation, I push the commit directly to this repository. However, as I want you to know this change, I would send the pull request.
Note that Docker images with the schema version 2.1 built and pushed by Podman cause an error when pulled by Docker. It's safe to use docker to build Docker containers. See https://discuss.dockstore.org/t/1972/12.
== How to run the Docker container ==
Then check the
Cromwell.stdout.txt, and find the temporary log directory, and find thestderrfile.E.g.