This is a note not to forget. The current test/test.py has 7 unit test cases (test_* methods). And the case test_all executes the WDL file by Dockstore CLI (run_wdl_by_dockstore_cli), and other test cases execute the directory by Cromwell cromwell-N.jar.
Running by Docksotre CLI: Convenient to run locally. But possibly a bit slow to run on CI. A bit more user-friendly.
Running by Cromwell directly. A lightweight. Perhaps the use case is a bit harder, as it creates the the cromwell-executions and cromwell-workflow-logs directories on the current working directory with root permission. This is good to run on the GitHub Actions CI environment.
The solution is to run test conditionally by Dockstore CLI or Cromwell Jar with an environment variable such as TEST_DOCKSTORE=true.
This is a note not to forget. The current
test/test.pyhas 7 unit test cases (test_*methods). And the casetest_allexecutes the WDL file by Dockstore CLI (run_wdl_by_dockstore_cli), and other test cases execute the directory by Cromwellcromwell-N.jar.cromwell-executionsandcromwell-workflow-logsdirectories on the current working directory with root permission. This is good to run on the GitHub Actions CI environment.The solution is to run test conditionally by Dockstore CLI or Cromwell Jar with an environment variable such as
TEST_DOCKSTORE=true.