search

GavinHaLab / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
12 stars 10 forks source link

Format Imports #21

Closed istvankleijn closed 3 months ago

istvankleijn commented 7 months ago

This fixes https://github.com/GavinHaLab/ichorCNA/issues/20. I have also taken the liberty to increase the version number to 0.5.1 so that this and previous fixes https://github.com/GavinHaLab/ichorCNA/pull/15 and especially https://github.com/GavinHaLab/ichorCNA/pull/16 can hopefully be propagated to bioconda/biocontainers and nf-core, as that is the context in which I am using ichorCNA. I am not sure what exactly needs to be done for that but am happy to help out.

SPPearce commented 3 months ago

@gavinha, can you please merge this PR (or something similar). You can't currently install the code directly, e.g. devtools::install_github("gavinhalab/ichorCNA") fails, and like @istvankleijn I'd also like to use the bioconda/biocontainers to be able to use in nextflow/nf-core.

lbeltrame commented 3 months ago

Likewise. I run a hacked-up version of ichorCNA in a custom container because the current state can't be installed.

SPPearce commented 3 months ago

Thanks @poojachandra . Could a new release or tag be created with the current version?

SPPearce commented 2 months ago

@poojachandra , can you please create a release or tag with the current version.