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GenEpiO / genepio

The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
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"Specimen from organism" is a material entity but has GEEM spec components. #18

Closed Public-Health-Bioinformatics closed 5 years ago

Public-Health-Bioinformatics commented 6 years ago

An information content entity is required instead. Probably need another term, like "organic specimen material", with the following axioms.

'has component' max 1 (categorical and (specifies some 'subject anatomical site')) 'has component' max 1 (categorical and (specifies some 'subject body product'))

ddooley commented 5 years ago

Fixed. Now there is a separate "specimen from organism specification" entity.