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GenEpiO / genepio

The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
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Update: SIR & WRG #49

Closed cmrn-rhi closed 1 year ago

cmrn-rhi commented 2 years ago

Import these terms once they are available in ARO: https://github.com/arpcard/aro/issues/11

Until then, we can update the GENEPIO terms until they can be made obsolete for the ARO versions:

http://purl.obolibrary.org/obo/GENEPIO_0002069 Label: Swedish Reference Group for Antibiotics (SIR) Definition: SIR is a revised system for antibiotic sensitivity testing in Sweden was proposed in 1977. The SIR system implied 2 main changes: 3 sensitivity groups instead of previous 4 and new breakpoints for the sensitivity groups. [https://doi.org/10.3109/inf.1981.13.issue-2.13]

http://purl.obolibrary.org/obo/GENEPIO_0002070 Label: Werkgroep Richtlijnen Gevoeligheidsbepalingen (WRG) Synonyms/Alternative Labels: Working Group Guidelines Susceptibility Testing, Commissie Richtlijnen Gevoeligheidsbepalingen (CRG), Committee Guidelines Susceptibility Testing Definition: WRG is a standardized antimicrobial susceptibility testing methodology created by the Dutch Commissie Richtlijnen Gevoeligheidsbepalingen in 1981. In these documents they have included species-specific regression lines clearly showing that these regression lines were different for different pathogens. [https://doi.org/10.1007/bf01964289] Synonym/Alternative labels source: https://www.nvmm.nl/media/4409/152-157-degener.pdf

cmrn-rhi commented 1 year ago

Terms will be available in GenEpiO upon the next public release.