search

GenSpectrum / LAPIS

An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
https://lapis-three.vercel.app
GNU Affero General Public License v3.0
21 stars 5 forks source link

chore(lapis): bump the minorandpatch group in /lapis with 4 updates #919

Closed dependabot[bot] closed 3 weeks ago

dependabot[bot] commented 3 weeks ago

Bumps the minorandpatch group in /lapis with 4 updates: org.jetbrains.kotlinx:kotlinx-datetime, org.springframework.boot, org.jetbrains.kotlin.jvm and org.jetbrains.kotlin.plugin.spring.

Updates org.jetbrains.kotlinx:kotlinx-datetime from 0.6.0 to 0.6.1

Release notes

Sourced from org.jetbrains.kotlinx:kotlinx-datetime's releases.

v0.6.1

  • Prohibit parsing non-ASCII digits as numbers in DateTimeFormat (#405)
  • More accurately determine which files represent time zones and which don't on Linux and Darwin (#395)
  • Fix a regression that occasionally considered the right boundary of a time overlap to be a part of it on Native (#399)
  • Introduce various small improvements to the timezone handling on Windows (#390)
  • On Linux, allow not having any /etc/localtime set, defaulting to TimeZone.UTC as the system time zone (#426)
Changelog

Sourced from org.jetbrains.kotlinx:kotlinx-datetime's changelog.

0.6.1

  • Prohibit parsing non-ASCII digits as numbers in DateTimeFormat (#405)
  • More accurately determine which files represent time zones and which don't on Linux and Darwin (#395)
  • Fix a regression that occasionally considered the right boundary of a time overlap to be a part of it on Native (#399)
  • Introduce various small improvements to the timezone handling on Windows (#390)
  • On Linux, allow not having any /etc/localtime set, defaulting to TimeZone.UTC as the system time zone (#426)
Commits


Updates org.springframework.boot from 3.3.2 to 3.3.3

Release notes

Sourced from org.springframework.boot's releases.

v3.3.3

:star: New Features

  • Add TWENTY_THREE to JavaVersion enum #41716

:lady_beetle: Bug Fixes

  • Extending DefaultErrorAttributes and overriding getErrorAttributes() gets called twice #41995
  • When using WebFlux, server.error.include-binding-errors=ALWAYS no longer has an effect when the BindingResult exception is the cause of a ResponseStatusException #41987
  • PropertiesLauncher does not respect classpath.idx when adding jars in BOOT-INF/lib to the classpath #41970
  • Web extension for SBOM endpoint isn't available under /cloudfoundryapplication #41890
  • Launcher's ClassLoader is no longer parallel capable #41873
  • spring-boot-testcontainers causes unwanted container initialization during AOT processing #41859
  • ReactiveElasticsearchRepositoriesAutoConfiguration should back off when Reactor is not on the classpath #41678
  • mvn spring-boot:build-image fails when 'classifier' is set to non-default value #41661
  • Spring Boot Maven plugin AOT cannot handle Maven modules with module-info.java #41647
  • Docker publishRegistry in Maven plugin configuration is validated when publish option is false #41641
  • Using Gradle's new file permission API is implemented in a way that prevents removal of the old API #41607
  • Some @ControllerEndpoint and @RestControllerEndpoint infrastructure remains undeprecated #41596
  • Constructor binding of EnumMap fails due to missing key type #41563

:notebook_with_decorative_cover: Documentation

  • Improve documented logging property descriptions and default values #41989
  • Explain that enabling virtual threads disables traditional thread pools #41976
  • Harmonize code sample for MyUserHandler in reference documentation #41949
  • Document when environment variable property mapping applies #41945
  • Javadoc of slice test annotations should describe more accurately which components are considered #41935
  • Fix duplicate words #41920
  • Document the need to explicitly reset mock servers when using mock server customizers directly #41849
  • Correct grammar in 'Running your Application with Maven' #41840
  • Document more clearly that username and password are not used when spring.data.redis.url is set #41748
  • Pulsar configuration does not have default value for several entries in the metadata #41683
  • management.otlp.metrics.export.aggregation-temporality does not have a default value in the metadata #41676
  • management.newrelic.metrics.export.client-provider-type does not have a default value in the metadata #41670
  • server.error.include-path does not have a default value in the metadata #41667
  • The effect upon Actuator of defining your own SecurityFilterChain is documented inconsistently #41638
  • "Use Spring Data repositories" How-to incorrectly refers to Repository annotations #41628
  • "Use Spring Data repositories" How-to incorrectly refers to Repository annotations #41627
  • Update link to documentation for log4j-spring-boot #41622
  • Fix link to Flyway reference documentation #41593
  • Document configuration property binding's support for using @Name to customize a property name #41585
  • Add hint for new dependencies required for Flyway #41574
  • Document that spring-boot:repackage should not be run from the command-line #22317

:hammer: Dependency Upgrades

  • Upgrade to ActiveMQ 6.1.3 #41782
  • Upgrade to Awaitility 4.2.2 #41707

... (truncated)

Commits
  • 27f852a Release v3.3.3
  • f0d2503 Merge branch '3.2.x' into 3.3.x
  • 1822b2f Include spring-boot-starter-parent in Integration tests repository
  • d4e1aed Merge branch '3.2.x' into 3.3.x
  • 0b24ee8 Improve loading of jar entry certificates
  • 29e4607 Merge branch '3.2.x' into 3.3.x
  • 112cfc8 Remove processed annotations plugin declaration
  • 05b73ce Call getErrorAttributes() only once
  • d974686 Upgrade to apachepulsar/pulsar 3.2.4
  • 459d899 Add release type attribute for Antora documentation generation
  • Additional commits viewable in compare view


Updates org.jetbrains.kotlin.jvm from 2.0.10 to 2.0.20

Release notes

Sourced from org.jetbrains.kotlin.jvm's releases.

Kotlin 2.0.20

Changelog

Analysis. API

New Features

  • KT-68143 Analysis API: support KtWhenConditionInRange call resolution

Performance Improvements

  • KT-67195 K2: do not call redundant resolve on body resolution phase for classes

Fixes

  • KT-67360 Analysis API: KtDestructuringDeclarationSymbol#entries shouldn't be KtLocalVariableSymbol
  • KT-67748 K2: AllCandidatesResolver modifies the original FirDelegatedConstructorCall
  • KT-68198 Analysis API: Support application service registration in plugin XMLs
  • KT-62936 Analysis API: NativeForwardDeclarationsSymbolProvider is not supported for Kotlin/Native
  • KT-68689 LL API: support analysis from builtins module
  • KT-69630 KAPT User project builds with KAPT4 enabled fail with Metaspace overflow
  • KT-65417 K2 IDE: KTOR false positive expect-actual matching error on enum class because of implicit clone() in non-JVM source sets
  • KT-68882 Analysis API: Refactor KaSymbols
  • KT-65413 K2 IDE: KTOR unresolved serializer() call for @Serializable class in common code
  • KT-67996 Analysis API: rename Kt prefix to Ka
  • KT-67775 Analysis API: expose only interfaces/abstract classes for the user surface
  • KT-68009 K2: lowering transformers of Compose compiler plugin access AbstractFir2IrLazyFunction modality, which results in null point exception
  • KT-68918 collectCallCandidates works incorrectly for parenthesis invoke
  • KT-68462 Analysis API: Integrate project-structure module into analysis-api and analysis-api-platform-interface
  • KT-69131 AA: "provideDelegate" operator is not resolved from the delegation reference in FIR implementation
  • KT-69055 Analysis API: Stabilize KaScopes
  • KT-66216 K2 IDE. "FirDeclaration was not found for class org.jetbrains.kotlin.psi.KtProperty, fir is null" on incorrect string template
  • KT-68959 Introduce KaSeverity
  • KT-53669 Analysis API: redesign KtSymbolOrigin to distinguish kotlin/java source/library declarations
  • KT-68846 Mark KaFirReference and all implementations with internal modifier
  • KT-68845 Move KaSymbolBasedReference to resolution package
  • KT-68844 Move KaTypeProjection to types package
  • KT-65849 K2: Rename 'high-level-api' family of JARs to 'analysis-api'
  • KT-62540 Remove uses of TypeInfo.fromString and TypeInfo.createTypeText from Kotlin plugin
  • KT-62889 K2 IDE. FP MISSING_DEPENDENCY_CLASS on not available type alias with available underlying type
  • KT-68155 Analysis API: Add PSI validity check to analyze
  • KT-62343 Analysis API: fix binary incopatibility problems cause by KtAnalysisSessionProvider.analyze being inline
  • KT-68498 To get reference symbol the one should be KtSymbolBasedReference
  • KT-68393 Analysis API: Rename KaClassLikeSymbol. classIdIfNonLocal to classId
  • KT-62924 Analysis API: rename KtCallableSymbol.callableIdIfNonLocal -> callableId
  • KT-66712 K2 IDE. SOE on settings string template for string variable with the same name
  • KT-65892 K2: "We should be able to find a symbol" for findNonLocalFunction
  • KT-68273 AA: support KtFirKDocReference#isReferenceToImportAlias
  • KT-68272 AA: KtFirReference.isReferenceToImportAlias doesn't work for references on constructor
  • KT-66996 Analysis API: Expose the abbreviated type of an expanded KtType
  • KT-66646 K2: Expected FirResolvedTypeRef with ConeKotlinType but was FirUserTypeRefImpl from FirJsHelpersKt.isExportedObject

... (truncated)

Changelog

Sourced from org.jetbrains.kotlin.jvm's changelog.

2.0.20

Analysis. API

New Features

  • KT-68143 Analysis API: support KtWhenConditionInRange call resolution

Performance Improvements

  • KT-67195 K2: do not call redundant resolve on body resolution phase for classes

Fixes

  • KT-67360 Analysis API: KtDestructuringDeclarationSymbol#entries shouldn't be KtLocalVariableSymbol
  • KT-67748 K2: AllCandidatesResolver modifies the original FirDelegatedConstructorCall
  • KT-68198 Analysis API: Support application service registration in plugin XMLs
  • KT-62936 Analysis API: NativeForwardDeclarationsSymbolProvider is not supported for Kotlin/Native
  • KT-68689 LL API: support analysis from builtins module
  • KT-69630 KAPT User project builds with KAPT4 enabled fail with Metaspace overflow
  • KT-65417 K2 IDE: KTOR false positive expect-actual matching error on enum class because of implicit clone() in non-JVM source sets
  • KT-68882 Analysis API: Refactor KaSymbols
  • KT-65413 K2 IDE: KTOR unresolved serializer() call for @Serializable class in common code
  • KT-67996 Analysis API: rename Kt prefix to Ka
  • KT-67775 Analysis API: expose only interfaces/abstract classes for the user surface
  • KT-68009 K2: lowering transformers of Compose compiler plugin access AbstractFir2IrLazyFunction modality, which results in null point exception
  • KT-68918 collectCallCandidates works incorrectly for parenthesis invoke
  • KT-68462 Analysis API: Integrate project-structure module into analysis-api and analysis-api-platform-interface
  • KT-69131 AA: "provideDelegate" operator is not resolved from the delegation reference in FIR implementation
  • KT-69055 Analysis API: Stabilize KaScopes
  • KT-66216 K2 IDE. "FirDeclaration was not found for class org.jetbrains.kotlin.psi.KtProperty, fir is null" on incorrect string template
  • KT-68959 Introduce KaSeverity
  • KT-53669 Analysis API: redesign KtSymbolOrigin to distinguish kotlin/java source/library declarations
  • KT-68846 Mark KaFirReference and all implementations with internal modifier
  • KT-68845 Move KaSymbolBasedReference to resolution package
  • KT-68844 Move KaTypeProjection to types package
  • KT-65849 K2: Rename 'high-level-api' family of JARs to 'analysis-api'
  • KT-62540 Remove uses of TypeInfo.fromString and TypeInfo.createTypeText from Kotlin plugin
  • KT-62889 K2 IDE. FP MISSING_DEPENDENCY_CLASS on not available type alias with available underlying type
  • KT-68155 Analysis API: Add PSI validity check to analyze
  • KT-62343 Analysis API: fix binary incopatibility problems cause by KtAnalysisSessionProvider.analyze being inline
  • KT-68498 To get reference symbol the one should be KtSymbolBasedReference
  • KT-68393 Analysis API: Rename KaClassLikeSymbol. classIdIfNonLocal to classId
  • KT-62924 Analysis API: rename KtCallableSymbol.callableIdIfNonLocal -> callableId
  • KT-66712 K2 IDE. SOE on settings string template for string variable with the same name
  • KT-65892 K2: "We should be able to find a symbol" for findNonLocalFunction
  • KT-68273 AA: support KtFirKDocReference#isReferenceToImportAlias
  • KT-68272 AA: KtFirReference.isReferenceToImportAlias doesn't work for references on constructor
  • KT-66996 Analysis API: Expose the abbreviated type of an expanded KtType
  • KT-66646 K2: Expected FirResolvedTypeRef with ConeKotlinType but was FirUserTypeRefImpl from FirJsHelpersKt.isExportedObject

... (truncated)

Commits
  • 6af99c8 Add changelog for 2.0.20
  • 68f075d Add ChangeLog for 2.0.20-RC2
  • 2b7c4f7 [K/Wasm] Don't add mappings into source-maps for unavailable sources
  • e35e9ae Update codeowners
  • c580c67 [K/N] Remember StableRefs, released during RC colleciton (KT-70159)
  • 565a35c [FIR2IR] Unset isLateinit flag for properties implemented by delegation
  • 5607bd3 [Test] Reproduce KT-70417
  • ce5d599 [K/JS] Fix coroutines on ES2015 generators when there is not a GeneratorCorou...
  • ca9fb23 Disallow open @​Composable functions with default params
  • 9a4c77e Update codeowners
  • Additional commits viewable in compare view


Updates org.jetbrains.kotlin.plugin.spring from 2.0.10 to 2.0.20

Release notes

Sourced from org.jetbrains.kotlin.plugin.spring's releases.

Kotlin 2.0.20

Changelog

Analysis. API

New Features

  • KT-68143 Analysis API: support KtWhenConditionInRange call resolution

Performance Improvements

  • KT-67195 K2: do not call redundant resolve on body resolution phase for classes

Fixes

  • KT-67360 Analysis API: KtDestructuringDeclarationSymbol#entries shouldn't be KtLocalVariableSymbol
  • KT-67748 K2: AllCandidatesResolver modifies the original FirDelegatedConstructorCall
  • KT-68198 Analysis API: Support application service registration in plugin XMLs
  • KT-62936 Analysis API: NativeForwardDeclarationsSymbolProvider is not supported for Kotlin/Native
  • KT-68689 LL API: support analysis from builtins module
  • KT-69630 KAPT User project builds with KAPT4 enabled fail with Metaspace overflow
  • KT-65417 K2 IDE: KTOR false positive expect-actual matching error on enum class because of implicit clone() in non-JVM source sets
  • KT-68882 Analysis API: Refactor KaSymbols
  • KT-65413 K2 IDE: KTOR unresolved serializer() call for @Serializable class in common code
  • KT-67996 Analysis API: rename Kt prefix to Ka
  • KT-67775 Analysis API: expose only interfaces/abstract classes for the user surface
  • KT-68009 K2: lowering transformers of Compose compiler plugin access AbstractFir2IrLazyFunction modality, which results in null point exception
  • KT-68918 collectCallCandidates works incorrectly for parenthesis invoke
  • KT-68462 Analysis API: Integrate project-structure module into analysis-api and analysis-api-platform-interface
  • KT-69131 AA: "provideDelegate" operator is not resolved from the delegation reference in FIR implementation
  • KT-69055 Analysis API: Stabilize KaScopes
  • KT-66216 K2 IDE. "FirDeclaration was not found for class org.jetbrains.kotlin.psi.KtProperty, fir is null" on incorrect string template
  • KT-68959 Introduce KaSeverity
  • KT-53669 Analysis API: redesign KtSymbolOrigin to distinguish kotlin/java source/library declarations
  • KT-68846 Mark KaFirReference and all implementations with internal modifier
  • KT-68845 Move KaSymbolBasedReference to resolution package
  • KT-68844 Move KaTypeProjection to types package
  • KT-65849 K2: Rename 'high-level-api' family of JARs to 'analysis-api'
  • KT-62540 Remove uses of TypeInfo.fromString and TypeInfo.createTypeText from Kotlin plugin
  • KT-62889 K2 IDE. FP MISSING_DEPENDENCY_CLASS on not available type alias with available underlying type
  • KT-68155 Analysis API: Add PSI validity check to analyze
  • KT-62343 Analysis API: fix binary incopatibility problems cause by KtAnalysisSessionProvider.analyze being inline
  • KT-68498 To get reference symbol the one should be KtSymbolBasedReference
  • KT-68393 Analysis API: Rename KaClassLikeSymbol. classIdIfNonLocal to classId
  • KT-62924 Analysis API: rename KtCallableSymbol.callableIdIfNonLocal -> callableId
  • KT-66712 K2 IDE. SOE on settings string template for string variable with the same name
  • KT-65892 K2: "We should be able to find a symbol" for findNonLocalFunction
  • KT-68273 AA: support KtFirKDocReference#isReferenceToImportAlias
  • KT-68272 AA: KtFirReference.isReferenceToImportAlias doesn't work for references on constructor
  • KT-66996 Analysis API: Expose the abbreviated type of an expanded KtType
  • KT-66646 K2: Expected FirResolvedTypeRef with ConeKotlinType but was FirUserTypeRefImpl from FirJsHelpersKt.isExportedObject

... (truncated)

Changelog

Sourced from org.jetbrains.kotlin.plugin.spring's changelog.

2.0.20

Analysis. API

New Features

  • KT-68143 Analysis API: support KtWhenConditionInRange call resolution

Performance Improvements

  • KT-67195 K2: do not call redundant resolve on body resolution phase for classes

Fixes

  • KT-67360 Analysis API: KtDestructuringDeclarationSymbol#entries shouldn't be KtLocalVariableSymbol
  • KT-67748 K2: AllCandidatesResolver modifies the original FirDelegatedConstructorCall
  • KT-68198 Analysis API: Support application service registration in plugin XMLs
  • KT-62936 Analysis API: NativeForwardDeclarationsSymbolProvider is not supported for Kotlin/Native
  • KT-68689 LL API: support analysis from builtins module
  • KT-69630 KAPT User project builds with KAPT4 enabled fail with Metaspace overflow
  • KT-65417 K2 IDE: KTOR false positive expect-actual matching error on enum class because of implicit clone() in non-JVM source sets
  • KT-68882 Analysis API: Refactor KaSymbols
  • KT-65413 K2 IDE: KTOR unresolved serializer() call for @Serializable class in common code
  • KT-67996 Analysis API: rename Kt prefix to Ka
  • KT-67775 Analysis API: expose only interfaces/abstract classes for the user surface
  • KT-68009 K2: lowering transformers of Compose compiler plugin access AbstractFir2IrLazyFunction modality, which results in null point exception
  • KT-68918 collectCallCandidates works incorrectly for parenthesis invoke
  • KT-68462 Analysis API: Integrate project-structure module into analysis-api and analysis-api-platform-interface
  • KT-69131 AA: "provideDelegate" operator is not resolved from the delegation reference in FIR implementation
  • KT-69055 Analysis API: Stabilize KaScopes
  • KT-66216 K2 IDE. "FirDeclaration was not found for class org.jetbrains.kotlin.psi.KtProperty, fir is null" on incorrect string template
  • KT-68959 Introduce KaSeverity
  • KT-53669 Analysis API: redesign KtSymbolOrigin to distinguish kotlin/java source/library declarations
  • KT-68846 Mark KaFirReference and all implementations with internal modifier
  • KT-68845 Move KaSymbolBasedReference to resolution package
  • KT-68844 Move KaTypeProjection to types package
  • KT-65849 K2: Rename 'high-level-api' family of JARs to 'analysis-api'
  • KT-62540 Remove uses of TypeInfo.fromString and TypeInfo.createTypeText from Kotlin plugin
  • KT-62889 K2 IDE. FP MISSING_DEPENDENCY_CLASS on not available type alias with available underlying type
  • KT-68155 Analysis API: Add PSI validity check to analyze
  • KT-62343 Analysis API: fix binary incopatibility problems cause by KtAnalysisSessionProvider.analyze being inline
  • KT-68498 To get reference symbol the one should be KtSymbolBasedReference
  • KT-68393 Analysis API: Rename KaClassLikeSymbol. classIdIfNonLocal to classId
  • KT-62924 Analysis API: rename KtCallableSymbol.callableIdIfNonLocal -> callableId
  • KT-66712 K2 IDE. SOE on settings string template for string variable with the same name
  • KT-65892 K2: "We should be able to find a symbol" for findNonLocalFunction
  • KT-68273 AA: support KtFirKDocReference#isReferenceToImportAlias
  • KT-68272 AA: KtFirReference.isReferenceToImportAlias doesn't work for references on constructor
  • KT-66996 Analysis API: Expose the abbreviated type of an expanded KtType
  • KT-66646 K2: Expected FirResolvedTypeRef with ConeKotlinType but was FirUserTypeRefImpl from FirJsHelpersKt.isExportedObject

... (truncated)

Commits
  • 6af99c8 Add changelog for 2.0.20
  • 68f075d Add ChangeLog for 2.0.20-RC2
  • 2b7c4f7 [K/Wasm] Don't add mappings into source-maps for unavailable sources
  • e35e9ae Update codeowners
  • c580c67 [K/N] Remember StableRefs, released during RC colleciton (KT-70159)
  • 565a35c [FIR2IR] Unset isLateinit flag for properties implemented by delegation
  • 5607bd3 [Test] Reproduce KT-70417
  • ce5d599 [K/JS] Fix coroutines on ES2015 generators when there is not a GeneratorCorou...
  • ca9fb23 Disallow open @​Composable functions with default params
  • 9a4c77e Update codeowners
  • Additional commits viewable in compare view


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore major version` will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself) - `@dependabot ignore minor version` will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself) - `@dependabot ignore ` will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself) - `@dependabot unignore ` will remove all of the ignore conditions of the specified dependency - `@dependabot unignore ` will remove the ignore condition of the specified dependency and ignore conditions
vercel[bot] commented 3 weeks ago

The latest updates on your projects. Learn more about Vercel for Git ↗︎

Name Status Preview Comments Updated (UTC)
lapis ✅ Ready (Inspect) Visit Preview 💬 Add feedback Aug 26, 2024 7:57pm