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GenSpectrum / cov-spectrum-website

A web platform to detect and analyze variants of SARS-CoV-2
https://cov-spectrum.org
GNU General Public License v3.0
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ENH: (MAYOR) Integrate Multivariate Early-Stage Characterization of Emerging Variants into Covspectrum #814

Open FedeGueli opened 1 year ago

FedeGueli commented 1 year ago

Authors (Pascal P. Klamser; Valeria d'Andrea; Francesco Di Lauro; Adrian Zachariae; Sebastiano Bontorin; Antonello di Nardo; Matthew Hall; Benjamin F. Maier; Luca Ferretti; Dirk Brockmann; Manlio De Domenico) of "Enhancing global preparedness during an ongoing pandemic from partial and noisy data " (PNAS Nexus, pgad192, https://doi.org/10.1093/pnasnexus/pgad192) here have shared their CODE here: https://zenodo.org/record/7998144 .

Being imagined for receiving data from Gisaid i guess it would not impossibel to get this integrated to COVSPECTRUM , their output seem very interesting ( Effective growth rate, Real prevalence, next exportation predictions etc) .

I am conscious this is a major work but still worth to take a look at this in my view.

FedeGueli commented 1 year ago

More info here https://twitter.com/PKlamser/status/1668160522347323392?s=20