GeneDx / phenopy

Phenotype comparison tools using semantic similarity.
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Improve phenotype annotations #13

Closed arvkevi closed 5 years ago

arvkevi commented 5 years ago

This PR will parse the new phenotype.hpoa format and handle custom phenotype to entity annotations.

codecov-io commented 5 years ago

Codecov Report

Merging #13 into develop will increase coverage by 0.61%. The diff coverage is 77.94%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop      #13      +/-   ##
===========================================
+ Coverage    68.52%   69.13%   +0.61%     
===========================================
  Files            9        9              
  Lines          556      567      +11     
===========================================
+ Hits           381      392      +11     
  Misses         175      175
Flag Coverage Δ
#unittests 69.13% <77.94%> (+0.61%) :arrow_up:
Impacted Files Coverage Δ
phenopy/__main__.py 0% <0%> (ø) :arrow_up:
phenopy/config.py 72.46% <100%> (ø) :arrow_up:
phenopy/obo.py 87.71% <100%> (ø) :arrow_up:
phenopy/ic.py 100% <100%> (ø) :arrow_up:
phenopy/network.py 80.95% <100%> (ø) :arrow_up:
phenopy/util.py 82.35% <100%> (ø) :arrow_up:
phenopy/score.py 91.89% <100%> (ø) :arrow_up:
phenopy/d2p.py 96.66% <96.66%> (ø)

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