GeneDx / phenopy

Phenotype comparison tools using semantic similarity.
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fix: changes the column headers in the phenotype.hpoa file, migrates … #92

Closed mcgeestephen closed 1 year ago

mcgeestephen commented 1 year ago

…everything to python 3_9, and the likelihood of molecular diagnosis code has been deprecated

codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 100.00% and project coverage change: +1.98 :tada:

Comparison is base (ab87d55) 73.04% compared to head (4f2f29e) 75.03%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #92 +/- ## =========================================== + Coverage 73.04% 75.03% +1.98% =========================================== Files 10 10 Lines 705 653 -52 =========================================== - Hits 515 490 -25 + Misses 190 163 -27 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `75.03% <100.00%> (+1.98%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx) | Coverage Δ | | |---|---|---| | [phenopy/\_\_main\_\_.py](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#diff-cGhlbm9weS9fX21haW5fXy5weQ==) | `0.00% <ø> (ø)` | | | [phenopy/config.py](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#diff-cGhlbm9weS9jb25maWcucHk=) | `77.10% <ø> (ø)` | | | [phenopy/\_\_init\_\_.py](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#diff-cGhlbm9weS9fX2luaXRfXy5weQ==) | `100.00% <100.00%> (ø)` | | | [phenopy/d2p.py](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#diff-cGhlbm9weS9kMnAucHk=) | `70.23% <100.00%> (+1.10%)` | :arrow_up: | | [phenopy/util.py](https://app.codecov.io/gh/GeneDx/phenopy/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=GeneDx#diff-cGhlbm9weS91dGlsLnB5) | `80.50% <100.00%> (+0.12%)` | :arrow_up: |

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