Open sbresnahan opened 10 hours ago
This issue is resolved upstream by filtering reads longer than 2^31 with samtools view -e 'length(seq)<2147483648' -O BAM -o out.bam in.bam
, however it would nice if isosceles could do this length filtering on import.
Version:
isosceles v0.2.1
Running
prepare_transcripts
with bulk ONT reads aligned to chr1 of GRCh38 with minimap2:Results in this error: