Genentech / jmpost

https://genentech.github.io/jmpost/
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Fix Example code #307

Closed gowerc closed 7 months ago

gowerc commented 7 months ago

No corresponding issue, just some misc updates to the examples to get the working with the newer GridX() changes

github-actions[bot] commented 7 months ago

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Code Coverage Summary

Filename                          Stmts    Miss  Cover    Missing
------------------------------  -------  ------  -------  --------------------------------
R/brier_score.R                     166       0  100.00%
R/DataJoint.R                        76       2  97.37%   264, 270
R/DataLongitudinal.R                119       1  99.16%   244
R/DataSubject.R                      69       1  98.55%   124
R/DataSurvival.R                     77       0  100.00%
R/defaults.R                         10       6  40.00%   18-57, 84
R/generics.R                         27       1  96.30%   51
R/Grid.R                             30       0  100.00%
R/GridEven.R                         32       0  100.00%
R/GridFixed.R                        30       0  100.00%
R/GridGrouped.R                      52       0  100.00%
R/GridManual.R                       23       3  86.96%   78-80
R/GridObserved.R                     20       0  100.00%
R/JointModel.R                      122       8  93.44%   142-144, 194, 198, 240, 286, 292
R/JointModelSamples.R                65       0  100.00%
R/Link.R                             55       4  92.73%   159-162
R/LinkComponent.R                    47       5  89.36%   100, 118, 132-149
R/LongitudinalGSF.R                  64       0  100.00%
R/LongitudinalModel.R                37      12  67.57%   70-85
R/LongitudinalQuantities.R           67       0  100.00%
R/LongitudinalRandomSlope.R          27       0  100.00%
R/LongitudinalSteinFojo.R            57       8  85.96%   113-135
R/Parameter.R                        14       0  100.00%
R/ParameterList.R                    42       1  97.62%   184
R/Prior.R                           236       8  96.61%   480, 576, 588-606
R/Quantities.R                       60       0  100.00%
R/settings.R                         12      12  0.00%    55-69
R/SimGroup.R                          5       0  100.00%
R/SimJointData.R                     72       1  98.61%   103
R/SimLongitudinal.R                   5       2  60.00%   22, 40
R/SimLongitudinalGSF.R               51       0  100.00%
R/SimLongitudinalRandomSlope.R       42       0  100.00%
R/SimLongitudinalSteinFojo.R         48       0  100.00%
R/SimSurvival.R                     104       0  100.00%
R/StanModel.R                        15       0  100.00%
R/StanModule.R                      179       6  96.65%   199-200, 242, 253, 390, 418
R/SurvivalExponential.R              10       0  100.00%
R/SurvivalLoglogistic.R              11       0  100.00%
R/SurvivalModel.R                    19       0  100.00%
R/SurvivalQuantities.R              166       1  99.40%   128
R/SurvivalWeibullPH.R                11       0  100.00%
R/utilities.R                       143       1  99.30%   13
R/zzz.R                              28      25  10.71%   3, 8-12, 14-35, 47
TOTAL                              2545     108  95.76%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: f2f0abc765897ead84e2e4ddd9ba213bca46312e

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 7 months ago

Unit Tests Summary

  1 files   41 suites   7m 18s :stopwatch: 125 tests  94 :white_check_mark: 31 :zzz: 0 :x: 877 runs  846 :white_check_mark: 31 :zzz: 0 :x:

Results for commit f2f0abc7.

github-actions[bot] commented 7 months ago

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
Grid 💚 $101.24$ $-2.70$ $0$ $0$ $0$ $0$
JointModelSamples 💚 $33.12$ $-1.18$ $0$ $0$ $0$ $0$
LongitudinalQuantiles 💚 $40.46$ $-1.23$ $0$ $0$ $0$ $0$
model_multi_chain 💔 $42.38$ $+1.91$ $0$ $0$ $0$ $0$
Additional test case details | Test Suite | $Status$ | Time on `main` | $±Time$ | Test Case | |:-----|:----:|:----:|:----:|:-----| | Grid | 💚 | $100.97$ | $-2.69$ | GridObservered_Constructs_correct_quantities | | JointModelSamples | 💚 | $33.12$ | $-1.18$ | print_works_as_expected_for_JointModelSamples | | LongitudinalQuantiles | 💚 | $33.11$ | $-1.19$ | Test_that_LongitudinalQuantities_works_as_expected | | model_multi_chain | 💔 | $42.38$ | $+1.91$ | Can_recover_known_distribution_parameters_from_random_slope_model_when_using_multiple_chains |

Results for commit 72a6f4fbe68fd85d1e982a3a074e8697acfc63e8

♻️ This comment has been updated with latest results.