Can midasHLA output the inferred protein sequences?

Genentech / midasHLA

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

https://genentech.github.io/MiDAS

MIT License

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Can midasHLA output the inferred protein sequences? #41

Closed bsb2014 closed 2 weeks ago

bsb2014 commented 4 weeks ago

I know midasHLA can output the AA number at each position. I am wondering if midasHLA can output aa sequences for a allele, such as converting DRB1*13:02 to ESSDYHNVFYDEAYVG. Thanks!

mcjmigdal commented 2 weeks ago

Hi, not really. You can load all the sequences though see readHlaAlignments function.