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Surface crashes in 6.4.0 #7132

Closed mkbarker closed 1 year ago

mkbarker commented 2 years ago

GMT 6.4.0 'surface' routine crashes with this:

gmt blockmedian Site01_scatInterp_v1_final_adj.xyzi -bi4 -R-19/-3/-20/-4 -I0.005 -C -bo3 -r | gmt surface -r -bi3 -R-19/-3/-20/-4 -I0.005 -T0.75 -Gtmp.grd -C0.001 -Ll-11 -Lu11 -Vd

If I leave out the -L flags, then it doesn't crash, but the resulting grid file (tmp.grd) is not correct (it looks like two big triangles).

If I leave out the -r flags (from both blockmedian and surface), then it doesn't crash, and the resulting grid file is correct, but it is gridline registered, which is not what I want.

If I decrease the resolution to 0.01 instead of 0.005 (and keep the -r and -L flags), then it produces the correct pixel-registered grid file.

Full script that generated the error

Link to input file. 1

gmt blockmedian Site01_scatInterp_v1_final_adj.xyzi -bi4 -R-19/-3/-20/-4 -I0.005 -C -bo3 -r | gmt surface -r -bi3 -R-19/-3/-20/-4 -I0.005 -T0.75 -Gtmp.grd -C0.001 -Ll-11 -Lu11 -Vd

Full error message

gmt [DEBUG]: GMT_Create_Session: Terminal width = 195
gmt [DEBUG]: Obtained the ppid from parent: 1674
gmt [DEBUG]: Enter: gmtinit_new_GMT_ctrl
gmt [DEBUG]: GMT->session.SHAREDIR = /panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/share
gmt [DEBUG]: GMT->session.HOMEDIR = /home/mkbarker
gmt [DEBUG]: GMT->session.USERDIR = /home/mkbarker/.gmt [created]
gmt [DEBUG]: GMT->session.CACHEDIR = /home/mkbarker/.gmt/cache [created]
gmt [DEBUG]: GMT: 0. Will try to find subdir=postscriptlight stem = PSL_custom_fonts suffix=.txt
gmt [DEBUG]: GMT: 1. gmt_getsharepath trying current dir
gmt [DEBUG]: GMT: 2. gmt_getsharepath trying USERDIR /home/mkbarker/.gmt
gmt [DEBUG]: GMT: 3. gmt_getsharepath trying USERDIR subdir /home/mkbarker/.gmt/postscriptlight
gmt [DEBUG]: GMT: 4. gmt_getsharepath trying SHAREDIR subdir /panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/share/postscriptlight
gmt [DEBUG]: GMT: 5. gmt_getsharepath trying SHAREDIR /panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/share
gmt [DEBUG]: GMT: 6. gmt_getsharepath failed
gmt [DEBUG]: Map distance calculation will be Cartesian
gmt [DEBUG]: Exit:  gmtinit_new_GMT_ctrl
gmt [DEBUG]: Enter: New_PSL_Ctrl
gmt [DEBUG]: Exit:  New_PSL_Ctrl
gmt [DEBUG]: Enter: gmt_manage_workflow
gmt [DEBUG]: Exit : gmt_manage_workflow
gmt [DEBUG]: Enter: PSL_beginsession
gmt [DEBUG]: Exit : PSL_beginsession
gmt [DEBUG]: Enter: PSL_setdefaults
gmt [DEBUG]: Exit : PSL_setdefaults
gmt [DEBUG]: Enter: gmtlib_io_init
gmt [DEBUG]: Exit : gmtlib_io_init
gmt [DEBUG]: Enter: gmt_hash_init
gmt [DEBUG]: Exit:  gmt_hash_init
gmt [DEBUG]: Enter: gmt_hash_init
gmt [DEBUG]: Exit:  gmt_hash_init
gmt [DEBUG]: Enter: gmt_reload_settings
gmt [DEBUG]: The PROJ_GEODESIC set to Vincenty
gmt [DEBUG]: Look for file /home/mkbarker/gmt.conf
gmt [DEBUG]: Look for file /home/mkbarker/.gmt/gmt.conf
gmt [DEBUG]: Look for file /home/mkbarker/.gmt/server/gmt.conf
gmt [DEBUG]: Look for file /home/mkbarker/.gmt/cache/gmt.conf
gmt [DEBUG]: Could not find file gmt.conf
gmt [DEBUG]: Exit:  gmt_reload_settings
gmt [DEBUG]: Enter: gmtlib_plot_C_format
gmt [DEBUG]: Exit:  gmtlib_plot_C_format
gmt [DEBUG]: Enter: gmtinit_get_history
gmt [DEBUG]: Enter: gmt_hash_init
gmt [DEBUG]: Exit:  gmt_hash_init
gmt [DEBUG]: Exit:  gmtinit_get_history
gmt [DEBUG]: Initialize FFTW with 12 threads.
gmt [DEBUG]: GMT_Create_Session initialized GMT structure
gmt [DEBUG]: Loading core GMT shared library: libgmt.so
gmt [DEBUG]: Shared Library # 0 (core). Path = libgmt.so
gmt [DEBUG]: Loading GMT plugins from: /panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/gmt/plugins
gmt [DEBUG]: Shared Library # 1 (supplements). Path = /panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/gmt/plugins/supplements.so
gmt [DEBUG]: Revised options: -r -bi3 -R-19/-3/-20/-4 -I0.005 -T0.75 -Gtmp.grd -C0.001 -Ll-11 -Lu11 -Vd
surface [DEBUG]: History: Process -R-19/-3/-20/-4
surface [DEBUG]: Look for file -19/-3/-20/-4 in /home/mkbarker/.gmt
surface [DEBUG]: Look for file -19/-3/-20/-4 in /home/mkbarker/.gmt/cache
surface [DEBUG]: Look for file -19/-3/-20/-4 in /home/mkbarker/.gmt/server
surface [DEBUG]: Got regular w/e/s/n for region (-19/-3/-20/-4)
surface [DEBUG]: Look for file -11 in /home/mkbarker/.gmt
surface [DEBUG]: Look for file -11 in /home/mkbarker/.gmt/cache
surface [DEBUG]: Look for file -11 in /home/mkbarker/.gmt/server
surface [DEBUG]: Look for file 11 in /home/mkbarker/.gmt
surface [DEBUG]: Look for file 11 in /home/mkbarker/.gmt/cache
surface [DEBUG]: Look for file 11 in /home/mkbarker/.gmt/server
surface [INFORMATION]: Provides 3, expects 3-column binary data
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Chosen boundary condition for all edges: natural
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Object ID 0 : Registered Grid Memory Reference a03cd0 as an Input resource with geometry Surface [n_objects = 1]
surface [DEBUG]: Successfully created a new Grid container
surface [INFORMATION]: Cannot suggest any n_columns,n_rows better than your current -R -I settings.
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Chosen boundary condition for all edges: natural
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Object ID 1 : Registered Grid Memory Reference a09610 as an Input resource with geometry Surface [n_objects = 2]
surface [DEBUG]: Successfully created a new Grid container
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Chosen boundary condition for all edges: natural
surface [INFORMATION]: Cartesian input grid
surface [DEBUG]: Object ID 2 : Registered Grid Memory Reference a094d0 as an Input resource with geometry Surface [n_objects = 3]
surface [DEBUG]: Successfully created a new Grid container
surface [INFORMATION]: Grid domain: W: -19 E: -3 S: -20 N: -4 n_columns: 3200 n_rows: 3200 [pixel registration]
surface [INFORMATION]: Processing input table data
surface [INFORMATION]: Input 3 columns via binary records using format ddd
surface [DEBUG]: gmtapi_init_import: Passed family = Data Table and geometry = Point
surface [DEBUG]: gmtapi_init_import: Added 0 new sources
surface [DEBUG]: Object ID 3 : Registered Data Table Stream 2b0dbcd47640 as an Input resource with geometry Point [n_objects = 4]
surface [DEBUG]: gmtapi_init_import: Added stdin to registered sources
surface [DEBUG]: GMT_Init_IO: Returned first Input object ID = 3
surface [DEBUG]: GMT_Begin_IO: Mode value 1 not considered (ignored)
surface [DEBUG]: GMT_Begin_IO: Initialize record-by-record access for Input
surface [DEBUG]: gmtapi_next_io_source: Selected object 3
surface [INFORMATION]: Reading Data Table from Standard Input stream
surface [DEBUG]: GMT_Begin_IO: Input resource access is now enabled [record-by-record]
surface [DEBUG]: GMT_End_IO: Input resource access is now disabled
surface [INFORMATION]: Minimum value of your dataset x,y,z at: -18.9974994659 -19.9424991608 -0.523202717304
surface [INFORMATION]: Maximum value of your dataset x,y,z at: -11.5725002289 -12.4724998474 1.9595233202
surface [INFORMATION]: Eliminate data points that are not nearest a node.
surface [INFORMATION]: Plane fit z = 1.05921 + (8.01847e-05 * col) + (-6.01073e-06 * row)
surface [INFORMATION]: Normalize detrended data constraints by z rms = 0.391272
surface [DEBUG]: Load any data constraint limit grids
surface [DEBUG]: Object ID 4 : Registered Grid Memory Reference a09390 as an Input resource with geometry Surface [n_objects = 5]
surface [DEBUG]: Successfully duplicated a Grid
surface [DEBUG]: Object ID 5 : Registered Grid Memory Reference a09250 as an Input resource with geometry Surface [n_objects = 6]
surface [DEBUG]: Successfully duplicated a Grid
surface [INFORMATION]: Recompute data index for next iteration [stride = 640]
surface [INFORMATION]: ------------------------------------------
surface [INFORMATION]: Memory for data array          :   22.2 Mb
surface [INFORMATION]: Memory for final grid          :   39.2 Mb
surface [INFORMATION]: Memory for constraint grid     :   39.2 Mb
surface [INFORMATION]: Memory for constraint grid     :   39.2 Mb
surface [INFORMATION]: Memory for Briggs coefficients :   22.2 Mb
surface [INFORMATION]: Memory for node status         :    9.8 Mb
surface [INFORMATION]: ------------------------------------------
surface [INFORMATION]: Total memory use               :  171.8 Mb
surface [INFORMATION]: ==========================================
surface [DEBUG]: Successfully added data array to previously registered Grid container
surface [INFORMATION]: Grid Mode    Iteration   Max Change  Conv Limit  Total Iterations
surface [INFORMATION]: Set finite-difference coefficients [stride = 640]
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 640]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 320000 [stride = 640]
surface [DEBUG]: Apply all boundary conditions [stride = 640]
surface [DEBUG]: Iteration 0
surface [DEBUG]:  640   D          1    -0.391271693085 1.5625e-06           1
surface [INFORMATION]:  640 D          1    -0.391271693085 1.5625e-06           1
surface [INFORMATION]: Recompute data index for next iteration [stride = 128]
surface [INFORMATION]: Expand grid by factor of 5 when going from stride = 640 to 128
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 128]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 64000 [stride = 128]
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 0
surface [DEBUG]:  128   I          1    0.865824664794  7.8125e-06           2
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 1
surface [DEBUG]:  128   I          2    0.262993189222  7.8125e-06           3
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 2
surface [DEBUG]:  128   I          3    0.169091881958  7.8125e-06           4
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 3
surface [DEBUG]:  128   I          4    0.113299972914  7.8125e-06           5
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 4
surface [DEBUG]:  128   I          5    0.0890424228621 7.8125e-06           6
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 5
surface [DEBUG]:  128   I          6    0.0785462813039 7.8125e-06           7
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 6
surface [DEBUG]:  128   I          7    0.0626517169683 7.8125e-06           8
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 7
surface [DEBUG]:  128   I          8    0.0524155797165 7.8125e-06           9
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 8
surface [DEBUG]:  128   I          9    0.0449849287096 7.8125e-06          10
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 9
surface [DEBUG]:  128   I         10    0.0384314512745 7.8125e-06          11
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 10
surface [DEBUG]:  128   I         11    0.0335729883286 7.8125e-06          12
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 11
surface [DEBUG]:  128   I         12    0.029087566783  7.8125e-06          13
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 12
surface [DEBUG]:  128   I         13    0.0253638440422 7.8125e-06          14
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 13
surface [DEBUG]:  128   I         14    0.0220909274451 7.8125e-06          15
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 14
surface [DEBUG]:  128   I         15    0.0192735012827 7.8125e-06          16
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 15
surface [DEBUG]:  128   I         16    0.0167797024012 7.8125e-06          17
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 16
surface [DEBUG]:  128   I         17    0.0145976267219 7.8125e-06          18
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 17
surface [DEBUG]:  128   I         18    0.0127165333314 7.8125e-06          19
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 18
surface [DEBUG]:  128   I         19    0.0115074168671 7.8125e-06          20
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 19
surface [DEBUG]:  128   I         20    0.0104645412136 7.8125e-06          21
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 20
surface [DEBUG]:  128   I         21    0.00949032088252    7.8125e-06          22
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 21
surface [DEBUG]:  128   I         22    0.00868005176322    7.8125e-06          23
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 22
surface [DEBUG]:  128   I         23    0.00793927054783    7.8125e-06          24
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 23
surface [DEBUG]:  128   I         24    0.00724042654355    7.8125e-06          25
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 24
surface [DEBUG]:  128   I         25    0.00658572160193    7.8125e-06          26
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 25
surface [DEBUG]:  128   I         26    0.00597606176751    7.8125e-06          27
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 26
surface [DEBUG]:  128   I         27    0.00541238165384    7.8125e-06          28
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 27
surface [DEBUG]:  128   I         28    0.00489469146411    7.8125e-06          29
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 28
surface [DEBUG]:  128   I         29    0.00442171171649    7.8125e-06          30
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 29
surface [DEBUG]:  128   I         30    0.00399069162703    7.8125e-06          31
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 30
surface [DEBUG]:  128   I         31    0.00359855594991    7.8125e-06          32
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 31
surface [DEBUG]:  128   I         32    0.00324241309697    7.8125e-06          33
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 32
surface [DEBUG]:  128   I         33    0.00291905518072    7.8125e-06          34
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 33
surface [DEBUG]:  128   I         34    0.00262604567592    7.8125e-06          35
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 34
surface [DEBUG]:  128   I         35    0.00236053584788    7.8125e-06          36
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 35
surface [DEBUG]:  128   I         36    0.00212018304085    7.8125e-06          37
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 36
surface [DEBUG]:  128   I         37    0.00190292008559    7.8125e-06          38
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 37
surface [DEBUG]:  128   I         38    0.00171011013022    7.8125e-06          39
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 38
surface [DEBUG]:  128   I         39    0.0015365515811 7.8125e-06          40
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 39
surface [DEBUG]:  128   I         40    0.00137952426391    7.8125e-06          41
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 40
surface [DEBUG]:  128   I         41    0.00123775685935    7.8125e-06          42
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 41
surface [DEBUG]:  128   I         42    0.00110975969959    7.8125e-06          43
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 42
surface [DEBUG]:  128   I         43    0.000994412472762   7.8125e-06          44
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 43
surface [DEBUG]:  128   I         44    0.000890390802923   7.8125e-06          45
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 44
surface [DEBUG]:  128   I         45    0.000796835580256   7.8125e-06          46
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 45
surface [DEBUG]:  128   I         46    0.000712761175208   7.8125e-06          47
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 46
surface [DEBUG]:  128   I         47    0.000637145226687   7.8125e-06          48
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 47
surface [DEBUG]:  128   I         48    0.000569408192678   7.8125e-06          49
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 48
surface [DEBUG]:  128   I         49    0.00050852771209    7.8125e-06          50
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 49
surface [DEBUG]:  128   I         50    0.000454034437516   7.8125e-06          51
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 50
surface [DEBUG]:  128   I         51    0.000405236591693   7.8125e-06          52
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 51
surface [DEBUG]:  128   I         52    0.000361473006968   7.8125e-06          53
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 52
surface [DEBUG]:  128   I         53    0.000322462074897   7.8125e-06          54
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 53
surface [DEBUG]:  128   I         54    0.000287665066284   7.8125e-06          55
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 54
surface [DEBUG]:  128   I         55    0.000256451423089   7.8125e-06          56
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 55
surface [DEBUG]:  128   I         56    0.00022860891866    7.8125e-06          57
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 56
surface [DEBUG]:  128   I         57    0.000203733506098   7.8125e-06          58
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 57
surface [DEBUG]:  128   I         58    0.000181466032605   7.8125e-06          59
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 58
surface [DEBUG]:  128   I         59    0.000161651409474   7.8125e-06          60
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 59
surface [DEBUG]:  128   I         60    0.000143799882887   7.8125e-06          61
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 60
surface [DEBUG]:  128   I         61    0.000128058378991   7.8125e-06          62
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 61
surface [DEBUG]:  128   I         62    0.000113953469095   7.8125e-06          63
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 62
surface [DEBUG]:  128   I         63    0.000101313739365   7.8125e-06          64
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 63
surface [DEBUG]:  128   I         64    9.00085887834e-05   7.8125e-06          65
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 64
surface [DEBUG]:  128   I         65    8.00829114497e-05   7.8125e-06          66
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 65
surface [DEBUG]:  128   I         66    7.11489855927e-05   7.8125e-06          67
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 66
surface [DEBUG]:  128   I         67    6.31619171131e-05   7.8125e-06          68
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 67
surface [DEBUG]:  128   I         68    5.61910878013e-05   7.8125e-06          69
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 68
surface [DEBUG]:  128   I         69    4.98773448591e-05   7.8125e-06          70
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 69
surface [DEBUG]:  128   I         70    4.41839567502e-05   7.8125e-06          71
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 70
surface [DEBUG]:  128   I         71    3.9306825001e-05    7.8125e-06          72
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 71
surface [DEBUG]:  128   I         72    3.48296588681e-05   7.8125e-06          73
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 72
surface [DEBUG]:  128   I         73    3.09728475687e-05   7.8125e-06          74
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 73
surface [DEBUG]:  128   I         74    2.73405067679e-05   7.8125e-06          75
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 74
surface [DEBUG]:  128   I         75    2.43856587459e-05   7.8125e-06          76
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 75
surface [DEBUG]:  128   I         76    2.16022245593e-05   7.8125e-06          77
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 76
surface [DEBUG]:  128   I         77    1.91003988169e-05   7.8125e-06          78
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 77
surface [DEBUG]:  128   I         78    1.6949563309e-05    7.8125e-06          79
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 78
surface [DEBUG]:  128   I         79    1.49374913824e-05   7.8125e-06          80
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 79
surface [DEBUG]:  128   I         80    1.3386604299e-05    7.8125e-06          81
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 80
surface [DEBUG]:  128   I         81    1.17704167067e-05   7.8125e-06          82
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 81
surface [DEBUG]:  128   I         82    1.04154311497e-05   7.8125e-06          83
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 82
surface [DEBUG]:  128   I         83    9.19920917383e-06   7.8125e-06          84
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 83
surface [DEBUG]:  128   I         84    8.21153897856e-06   7.8125e-06          85
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 84
surface [DEBUG]:  128   I         85    7.28100672837e-06   7.8125e-06          86
surface [INFORMATION]:  128 I         85    7.28100672837e-06   7.8125e-06          86
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 128]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 64000 [stride = 128]
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 0
surface [DEBUG]:  128   D          1    0.118818296963  7.8125e-06          87
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 1
surface [DEBUG]:  128   D          2    0.0476370290872 7.8125e-06          88
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 2
surface [DEBUG]:  128   D          3    0.0190988285752 7.8125e-06          89
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 3
surface [DEBUG]:  128   D          4    0.00765714654773    7.8125e-06          90
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 4
surface [DEBUG]:  128   D          5    0.00306991729833    7.8125e-06          91
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 5
surface [DEBUG]:  128   D          6    0.00123080115504    7.8125e-06          92
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 6
surface [DEBUG]:  128   D          7    0.000493485158766   7.8125e-06          93
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 7
surface [DEBUG]:  128   D          8    0.00019784993928    7.8125e-06          94
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 8
surface [DEBUG]:  128   D          9    7.93376649789e-05   7.8125e-06          95
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 9
surface [DEBUG]:  128   D         10    3.18119403741e-05   7.8125e-06          96
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 10
surface [DEBUG]:  128   D         11    1.2752511801e-05    7.8125e-06          97
surface [DEBUG]: Apply all boundary conditions [stride = 128]
surface [DEBUG]: Iteration 11
surface [DEBUG]:  128   D         12    5.08637224413e-06   7.8125e-06          98
surface [INFORMATION]:  128 D         12    5.08637224413e-06   7.8125e-06          98
surface [INFORMATION]: Recompute data index for next iteration [stride = 64]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 128 to 64
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 64]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 32000 [stride = 64]
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   64   I          1    0.1577321464    1.5625e-05          99
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   64   I          2    0.0693129781223 1.5625e-05         100
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   64   I          3    0.0255644839367 1.5625e-05         101
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   64   I          4    0.0121759685775 1.5625e-05         102
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   64   I          5    0.00788582106108    1.5625e-05         103
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   64   I          6    0.00492819266576    1.5625e-05         104
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   64   I          7    0.00312282337771    1.5625e-05         105
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   64   I          8    0.00183320490531    1.5625e-05         106
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   64   I          9    0.00123509433314    1.5625e-05         107
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   64   I         10    0.000835588973488   1.5625e-05         108
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 10
surface [DEBUG]:   64   I         11    0.000600285578507   1.5625e-05         109
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 11
surface [DEBUG]:   64   I         12    0.000413092166375   1.5625e-05         110
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 12
surface [DEBUG]:   64   I         13    0.00027395004634    1.5625e-05         111
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 13
surface [DEBUG]:   64   I         14    0.000182971770509   1.5625e-05         112
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 14
surface [DEBUG]:   64   I         15    0.000120712199293   1.5625e-05         113
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 15
surface [DEBUG]:   64   I         16    8.74526860573e-05   1.5625e-05         114
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 16
surface [DEBUG]:   64   I         17    5.85990440624e-05   1.5625e-05         115
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 17
surface [DEBUG]:   64   I         18    4.23907435601e-05   1.5625e-05         116
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 18
surface [DEBUG]:   64   I         19    2.84391567402e-05   1.5625e-05         117
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 19
surface [DEBUG]:   64   I         20    1.97521763316e-05   1.5625e-05         118
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 20
surface [DEBUG]:   64   I         21    1.34892102742e-05   1.5625e-05         119
surface [INFORMATION]:   64 I         21    1.34892102742e-05   1.5625e-05         119
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 64]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 32000 [stride = 64]
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   64   D          1    0.0642454035003 1.5625e-05         120
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   64   D          2    0.0256981623016 1.5625e-05         121
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   64   D          3    0.0102792672842 1.5625e-05         122
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   64   D          4    0.00411170781516    1.5625e-05         123
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   64   D          5    0.00164467895955    1.5625e-05         124
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   64   D          6    0.000657865955255   1.5625e-05         125
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   64   D          7    0.000263148745643   1.5625e-05         126
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   64   D          8    0.000105260399742   1.5625e-05         127
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   64   D          9    4.21065234374e-05   1.5625e-05         128
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   64   D         10    1.68435108597e-05   1.5625e-05         129
surface [DEBUG]: Apply all boundary conditions [stride = 64]
surface [DEBUG]: Iteration 10
surface [DEBUG]:   64   D         11    6.72997280825e-06   1.5625e-05         130
surface [INFORMATION]:   64 D         11    6.72997280825e-06   1.5625e-05         130
surface [INFORMATION]: Recompute data index for next iteration [stride = 32]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 64 to 32
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 32]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 16000 [stride = 32]
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   32   I          1    0.0936112617264 3.125e-05          131
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   32   I          2    0.0368228303788 3.125e-05          132
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   32   I          3    0.0119288793598 3.125e-05          133
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   32   I          4    0.00720486123364    3.125e-05          134
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   32   I          5    0.00405907401373    3.125e-05          135
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   32   I          6    0.00263565556408    3.125e-05          136
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   32   I          7    0.00163061288271    3.125e-05          137
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   32   I          8    0.00108315178291    3.125e-05          138
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   32   I          9    0.000738765062187   3.125e-05          139
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   32   I         10    0.000485443982238   3.125e-05          140
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 10
surface [DEBUG]:   32   I         11    0.000309095877007   3.125e-05          141
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 11
surface [DEBUG]:   32   I         12    0.000220479005317   3.125e-05          142
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 12
surface [DEBUG]:   32   I         13    0.000133006933171   3.125e-05          143
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 13
surface [DEBUG]:   32   I         14    9.71794009035e-05   3.125e-05          144
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 14
surface [DEBUG]:   32   I         15    6.14253317079e-05   3.125e-05          145
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 15
surface [DEBUG]:   32   I         16    3.84273087735e-05   3.125e-05          146
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 16
surface [DEBUG]:   32   I         17    2.5906446376e-05    3.125e-05          147
surface [INFORMATION]:   32 I         17    2.5906446376e-05    3.125e-05          147
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 32]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 16000 [stride = 32]
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   32   D          1    0.060841571938  3.125e-05          148
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   32   D          2    0.0247257232407 3.125e-05          149
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   32   D          3    0.0100883622323 3.125e-05          150
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   32   D          4    0.00457551467217    3.125e-05          151
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   32   D          5    0.00225391627865    3.125e-05          152
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   32   D          6    0.00103353375153    3.125e-05          153
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   32   D          7    0.000449056989959   3.125e-05          154
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   32   D          8    0.000186447801501   3.125e-05          155
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   32   D          9    7.42512304588e-05   3.125e-05          156
surface [DEBUG]: Apply all boundary conditions [stride = 32]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   32   D         10    2.83904991878e-05   3.125e-05          157
surface [INFORMATION]:   32 D         10    2.83904991878e-05   3.125e-05          157
surface [INFORMATION]: Recompute data index for next iteration [stride = 16]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 32 to 16
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 16]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 8000 [stride = 16]
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   16   I          1    0.051711525956  6.25e-05           158
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   16   I          2    0.0206482596298 6.25e-05           159
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   16   I          3    0.0065597412142 6.25e-05           160
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   16   I          4    0.00376810872095    6.25e-05           161
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   16   I          5    0.00212375212178    6.25e-05           162
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   16   I          6    0.00134731886923    6.25e-05           163
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   16   I          7    0.000961566316847   6.25e-05           164
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   16   I          8    0.000578417622248   6.25e-05           165
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   16   I          9    0.000399841137156   6.25e-05           166
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   16   I         10    0.000283485833722   6.25e-05           167
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 10
surface [DEBUG]:   16   I         11    0.000184159678593   6.25e-05           168
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 11
surface [DEBUG]:   16   I         12    0.000131874377472   6.25e-05           169
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 12
surface [DEBUG]:   16   I         13    8.07583635873e-05   6.25e-05           170
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 13
surface [DEBUG]:   16   I         14    6.23272949854e-05   6.25e-05           171
surface [INFORMATION]:   16 I         14    6.23272949854e-05   6.25e-05           171
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 16]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 8000 [stride = 16]
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 0
surface [DEBUG]:   16   D          1    0.0554780186788 6.25e-05           172
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 1
surface [DEBUG]:   16   D          2    0.0201522055679 6.25e-05           173
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 2
surface [DEBUG]:   16   D          3    0.00693798993274    6.25e-05           174
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 3
surface [DEBUG]:   16   D          4    0.00322166908744    6.25e-05           175
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 4
surface [DEBUG]:   16   D          5    0.00168155630072    6.25e-05           176
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 5
surface [DEBUG]:   16   D          6    0.000789646560534   6.25e-05           177
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 6
surface [DEBUG]:   16   D          7    0.000416565901638   6.25e-05           178
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 7
surface [DEBUG]:   16   D          8    0.000210901259038   6.25e-05           179
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 8
surface [DEBUG]:   16   D          9    9.86207673503e-05   6.25e-05           180
surface [DEBUG]: Apply all boundary conditions [stride = 16]
surface [DEBUG]: Iteration 9
surface [DEBUG]:   16   D         10    4.48079757044e-05   6.25e-05           181
surface [INFORMATION]:   16 D         10    4.48079757044e-05   6.25e-05           181
surface [INFORMATION]: Recompute data index for next iteration [stride = 8]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 16 to 8
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 8]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 4000 [stride = 8]
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    8   I          1    0.022222551844  0.000125           182
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    8   I          2    0.00889093465471    0.000125           183
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    8   I          3    0.0033690062958 0.000125           184
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    8   I          4    0.00182076184234    0.000125           185
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 4
surface [DEBUG]:    8   I          5    0.000990429141726   0.000125           186
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 5
surface [DEBUG]:    8   I          6    0.000636256527575   0.000125           187
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 6
surface [DEBUG]:    8   I          7    0.000422173911157   0.000125           188
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 7
surface [DEBUG]:    8   I          8    0.000274260096217   0.000125           189
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 8
surface [DEBUG]:    8   I          9    0.000189812253883   0.000125           190
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 9
surface [DEBUG]:    8   I         10    0.000126219761541   0.000125           191
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 10
surface [DEBUG]:    8   I         11    8.64639955415e-05   0.000125           192
surface [INFORMATION]:    8 I         11    8.64639955415e-05   0.000125           192
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 8]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 4000 [stride = 8]
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    8   D          1    0.0222586199914 0.000125           193
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    8   D          2    0.00968459238908    0.000125           194
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    8   D          3    0.004279767711  0.000125           195
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    8   D          4    0.00208018263738    0.000125           196
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 4
surface [DEBUG]:    8   D          5    0.00107431067263    0.000125           197
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 5
surface [DEBUG]:    8   D          6    0.00056394335635    0.000125           198
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 6
surface [DEBUG]:    8   D          7    0.000371539488524   0.000125           199
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 7
surface [DEBUG]:    8   D          8    0.000298441112514   0.000125           200
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 8
surface [DEBUG]:    8   D          9    0.000207440380621   0.000125           201
surface [DEBUG]: Apply all boundary conditions [stride = 8]
surface [DEBUG]: Iteration 9
surface [DEBUG]:    8   D         10    0.000122391005128   0.000125           202
surface [INFORMATION]:    8 D         10    0.000122391005128   0.000125           202
surface [INFORMATION]: Recompute data index for next iteration [stride = 4]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 8 to 4
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 4]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 2000 [stride = 4]
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    4   I          1    0.0112391215642 0.00025        203
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    4   I          2    0.00393448319378    0.00025        204
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    4   I          3    0.00159852176393    0.00025        205
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    4   I          4    0.000916129406585   0.00025        206
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 4
surface [DEBUG]:    4   I          5    0.000496802189483   0.00025        207
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 5
surface [DEBUG]:    4   I          6    0.000298278439601   0.00025        208
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 6
surface [DEBUG]:    4   I          7    0.000200962315757   0.00025        209
surface [INFORMATION]:    4 I          7    0.000200962315757   0.00025        209
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 4]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 2000 [stride = 4]
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    4   D          1    0.0107981694766 0.00025        210
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    4   D          2    0.00725090217361    0.00025        211
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    4   D          3    0.00375568529915    0.00025        212
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    4   D          4    0.00180171245955    0.00025        213
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 4
surface [DEBUG]:    4   D          5    0.00120869405167    0.00025        214
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 5
surface [DEBUG]:    4   D          6    0.000761121303559   0.00025        215
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 6
surface [DEBUG]:    4   D          7    0.000396464896788   0.00025        216
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 7
surface [DEBUG]:    4   D          8    0.000270606328686   0.00025        217
surface [DEBUG]: Apply all boundary conditions [stride = 4]
surface [DEBUG]: Iteration 8
surface [DEBUG]:    4   D          9    0.000198040117989   0.00025        218
surface [INFORMATION]:    4 D          9    0.000198040117989   0.00025        218
surface [INFORMATION]: Recompute data index for next iteration [stride = 2]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 4 to 2
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 2]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 1000 [stride = 2]
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    2   I          1    0.00422898338676    0.0005         219
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    2   I          2    0.00160943307082    0.0005         220
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    2   I          3    0.000568059329043   0.0005         221
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    2   I          4    0.000384485314389   0.0005         222
surface [INFORMATION]:    2 I          4    0.000384485314389   0.0005         222
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 2]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 1000 [stride = 2]
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    2   D          1    0.00645081760696    0.0005         223
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    2   D          2    0.0045083787558 0.0005         224
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    2   D          3    0.00235320178449    0.0005         225
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    2   D          4    0.00123288814525    0.0005         226
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 4
surface [DEBUG]:    2   D          5    0.000803301733566   0.0005         227
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 5
surface [DEBUG]:    2   D          6    0.000539614835549   0.0005         228
surface [DEBUG]: Apply all boundary conditions [stride = 2]
surface [DEBUG]: Iteration 6
surface [DEBUG]:    2   D          7    0.000423879886948   0.0005         229
surface [INFORMATION]:    2 D          7    0.000423879886948   0.0005         229
surface [INFORMATION]: Recompute data index for next iteration [stride = 1]
surface [INFORMATION]: Expand grid by factor of 2 when going from stride = 2 to 1
surface [INFORMATION]: Fill in expanded grid by bilinear interpolation [stride = 1]
surface [DEBUG]: Starting iterations, mode = node Max iterations = 500 [stride = 1]
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    1   I          1    0.00075495244612    0.001          230
surface [INFORMATION]:    1 I          1    0.00075495244612    0.001          230
surface [INFORMATION]: Determine nearest point and set Briggs coefficients [stride = 1]
surface [DEBUG]: Starting iterations, mode = data Max iterations = 500 [stride = 1]
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [DEBUG]: Iteration 0
surface [DEBUG]:    1   D          1    0.00405275567934    0.001          231
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [DEBUG]: Iteration 1
surface [DEBUG]:    1   D          2    0.00252914431234    0.001          232
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [DEBUG]: Iteration 2
surface [DEBUG]:    1   D          3    0.00137233610634    0.001          233
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [DEBUG]: Iteration 3
surface [DEBUG]:    1   D          4    0.000891460098754   0.001          234
surface [INFORMATION]:    1 D          4    0.000891460098754   0.001          234
surface [INFORMATION]: Compute rms misfit and curvature.
surface [DEBUG]: Apply all boundary conditions [stride = 1]
surface [INFORMATION]: Fit info: N data points  N nodes mean error  rms error   curvature
surface [INFORMATION]:    972012    10246401    0   0   711.859772643
surface [DEBUG]: GMT_Destroy_Data: freed memory for a Grid for object 4
surface [DEBUG]: gmtlib_unregister_io: Unregistering object no 4 [n_objects = 5]
surface [DEBUG]: gmtlib_unregister_io: Object no 4 has non-NULL resource pointer
surface [DEBUG]: GMT_Destroy_Data: freed memory for a Grid for object 5
surface [DEBUG]: gmtlib_unregister_io: Unregistering object no 5 [n_objects = 4]
surface [DEBUG]: gmtlib_unregister_io: Object no 5 has non-NULL resource pointer
surface [INFORMATION]: Increase pad by -1 0 -1 0
surface [DEBUG]: Prepare final output grid [stride = 1]
surface [DEBUG]: Load any data constraint limit grids
surface [DEBUG]: Object ID 6 : Registered Grid Memory Reference a09250 as an Input resource with geometry Surface [n_objects = 5]
surface [DEBUG]: Successfully duplicated a Grid
ERROR: Caught signal number 11 (Segmentation fault) at
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(+0x381d48)[0x2b0db896bd48]
[0x2b0dc5f81000]
Stack backtrace:
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(sig_handler_unix+0xc5)[0x2b0db8719f55]
/lib64/libpthread.so.0(+0xf630)[0x2b0dbbe0b630]
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(+0x381d48)[0x2b0db896bd48]
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(+0x3828c7)[0x2b0db896c8c7]
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(GMT_surface+0x31b4)[0x2b0db8970354]
/panfs/ccds02/nobackup/people/sberton2/.spack_repo/opt/spack/linux-centos7-haswell/gcc-11.1.0/gmt-6.4.0-xdmacvrgjo3w4eprh25qlo4fjsxfjx5u/lib64/libgmt.so.6(GMT_Call_Module+0x33e)[0x2b0db863f2de]
gmt(main+0x412)[0x404ea2]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x2b0dbc9a1555]
gmt[0x405bb3]

Actual outcome

Incorrect grid file with two triangle-like features:

Screen Shot 2022-12-04 at 3 21 23 PM

Expected outcome

Correct grid file with topography:

Screen Shot 2022-12-04 at 3 21 37 PM

System information

welcome[bot] commented 2 years ago

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PaulWessel commented 1 year ago

The triangular feature is most likely due to a dimension (say length of a column) that is off by 1 and hence points are placed successively off by one as we go across. This also explains why the triangle might go the other way (the dimension is 1 less or 1 more).