Closed gracoba closed 5 years ago
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commented
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gracoba
commented
5 years ago Is it possible to be related to libc?
/lib64/libc.so.6GNU C Library stable release version 2.12, by Roland McGrath et al.
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
Compiled by GNU CC version 4.4.7 20120313 (Red Hat 4.4.7-23).
Compiled on a Linux 2.6.32 system on 2019-04-09.
Available extensions:
The C stubs add-on version 2.1.2.
crypt add-on version 2.1 by Michael Glad and others
GNU Libidn by Simon Josefsson
Native POSIX Threads Library by Ulrich Drepper et al
BIND-8.2.3-T5B
RT using linux kernel aio
libc ABIs: UNIQUE IFUNC
For bug reporting instructions, please see:
<http://www.gnu.org/software/libc/bugs.html>.
weiji14
commented
5 years ago Hi @gracoba, sorry for the late reply, the team has been a bit busy trying to get GMT 6.0.0rc1 out of the door (and there's still a few things to iron out). Could you maybe specify what was the version of FFTW you upgraded from (and what version you have now). For reference, the version I have on my Debian system is 3.3.7-1, and I think the latest one available from conda is 3.3.8, is that what you have?
Alternatively (if you don't have a specific reason to compile from source), you could give the new conda package a go using conda install -c conda-forge/label/dev gmt. Let me know if you encounter any problems and we'll try to help you out :)
gracoba
commented
5 years ago Hello @weiji14,
Thank you for you reply. I can imagine how much work the GMT team is having.
Yes, I have the version 3.3.8 of FFTW
(fftw-3.3.8 fftw_wisdom #x91a0d0f0 #xe3fff824 #xbb042095 #x2f9c8270
)After the following command:
conda install -c conda-forge/label/cf201901 gmtIt worked!! Thank you very much!!
====================================================================================== 24 failed, 134 passed, 1 skipped, 1 warnings in 56.67 seconds =======================================================================================
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Work/anaconda3/envs/pygmt/lib/python3.6/site-packages/pygmt/__init__.py", line 98, in test
assert status == 0, "Some tests have failed."
AssertionError: Some tests have failed.
Description of the problem
I made the first installation of GMT6 (built as described), and I ran the pygmt.test() successfully. After update FFTW I got the error message copied here.
Full code that generated the error
Full error message
System information
conda listbelow:output of conda list