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GenericMappingTools / pygmt

A Python interface for the Generic Mapping Tools.
https://www.pygmt.org
BSD 3-Clause "New" or "Revised" License
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*pygmt.test()* test failures on GMT 6.1.0 #508

Closed lhoupert closed 4 years ago

lhoupert commented 4 years ago

Description of the problem

Hi I followed the tutorial to install pygmt and gmt through conda [described here]. But I am running through a lot of faillure when running pygmt.test().

Any idea why? Should I try a less recent version of python?

Full code that generated the error

In [1]: import pygmt                                                                                                                                                                                                                                               
In [2]: pygmt.test()

53 tests failed, 212 passed, 1 skipped

Full error message

Click to expand! ```python In [2]: pygmt.test() PyGMT information: version: v0.1.2 System information: python: 3.8.3 | packaged by conda-forge | (default, Jun 1 2020, 17:21:09) [Clang 9.0.1 ] executable: /Users/locupe/anaconda2/envs/pygmt/bin/python machine: macOS-10.15.5-x86_64-i386-64bit Dependency information: numpy: 1.18.5 pandas: 1.0.5 xarray: 0.15.1 netCDF4: 1.5.3 packaging: 20.4 ghostscript: 9.22 gmt: 6.1.0 GMT library information: binary dir: /Users/locupe/anaconda2/envs/pygmt/bin cores: 12 grid layout: rows library path: /Users/locupe/anaconda2/envs/pygmt/lib/libgmt.dylib padding: 2 plugin dir: /Users/locupe/anaconda2/envs/pygmt/lib/gmt/plugins share dir: /Users/locupe/anaconda2/envs/pygmt/share/gmt version: 6.1.0 ======================================================================================================================= test session starts ======================================================================================================================= platform darwin -- Python 3.8.3, pytest-5.4.3, py-1.9.0, pluggy-0.13.1 -- /Users/locupe/anaconda2/envs/pygmt/bin/python cachedir: .pytest_cache Matplotlib: 3.2.2 Freetype: 2.10.2 rootdir: /Users/locupe/Dropbox/Work/Python/Repos_perso/analysis_eel_data plugins: mpl-0.11 collected 266 items base_plotting.py::pygmt.base_plotting.BasePlotting._preprocess <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/base_plotting.py PASSED [ 0%] figure.py::pygmt.figure.Figure <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/figure.py PASSED [ 0%] clib/conversion.py::pygmt.clib.conversion.as_c_contiguous <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/conversion.py PASSED [ 1%] clib/conversion.py::pygmt.clib.conversion.dataarray_to_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/conversion.py FAILED [ 1%] clib/conversion.py::pygmt.clib.conversion.kwargs_to_ctypes_array <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/conversion.py PASSED [ 1%] clib/conversion.py::pygmt.clib.conversion.vectors_to_arrays <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/conversion.py PASSED [ 2%] clib/session.py::pygmt.clib.session.Session <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py FAILED [ 2%] clib/session.py::pygmt.clib.session.Session._check_dtype_and_dim <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 3%] clib/session.py::pygmt.clib.session.Session.extract_region <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 3%] clib/session.py::pygmt.clib.session.Session.get_libgmt_func <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 3%] clib/session.py::pygmt.clib.session.Session.open_virtual_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 4%] clib/session.py::pygmt.clib.session.Session.virtualfile_from_grid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py FAILED [ 4%] clib/session.py::pygmt.clib.session.Session.virtualfile_from_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 4%] clib/session.py::pygmt.clib.session.Session.virtualfile_from_vectors <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py PASSED [ 5%] datasets/earth_relief.py::pygmt.datasets.earth_relief._is_valid_resolution <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/datasets/earth_relief.py PASSED [ 5%] datasets/earth_relief.py::pygmt.datasets.earth_relief._shape_from_resolution <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/datasets/earth_relief.py PASSED [ 6%] helpers/decorators.py::pygmt.helpers.decorators.fmt_docstring <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/decorators.py PASSED [ 6%] helpers/decorators.py::pygmt.helpers.decorators.kwargs_to_strings <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/decorators.py PASSED [ 6%] helpers/decorators.py::pygmt.helpers.decorators.use_alias <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/decorators.py PASSED [ 7%] helpers/tempfile.py::pygmt.helpers.tempfile.GMTTempFile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/tempfile.py PASSED [ 7%] helpers/utils.py::pygmt.helpers.utils.build_arg_string <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/utils.py PASSED [ 7%] helpers/utils.py::pygmt.helpers.utils.data_kind <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/utils.py PASSED [ 8%] helpers/utils.py::pygmt.helpers.utils.dummy_context <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/utils.py PASSED [ 8%] helpers/utils.py::pygmt.helpers.utils.is_nonstr_iter <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/helpers/utils.py PASSED [ 9%] tests/test_basemap.py::test_basemap_required_args <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 9%] tests/test_basemap.py::test_basemap <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 9%] tests/test_basemap.py::test_basemap_list_region <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 10%] tests/test_basemap.py::test_basemap_loglog <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 10%] tests/test_basemap.py::test_basemap_power_axis <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 10%] tests/test_basemap.py::test_basemap_polar <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py FAILED [ 11%] tests/test_basemap.py::test_basemap_winkel_tripel <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 11%] tests/test_basemap.py::test_basemap_aliases <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_basemap.py PASSED [ 12%] tests/test_blockmedian.py::test_blockmedian_input_dataframe <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_blockmedian.py PASSED [ 12%] tests/test_blockmedian.py::test_blockmedian_wrong_kind_of_input_table_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_blockmedian.py PASSED [ 12%] tests/test_blockmedian.py::test_blockmedian_wrong_kind_of_input_table_grid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_blockmedian.py PASSED [ 13%] tests/test_blockmedian.py::test_blockmedian_input_filename <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_blockmedian.py PASSED [ 13%] tests/test_blockmedian.py::test_blockmedian_without_outfile_setting <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_blockmedian.py PASSED [ 13%] tests/test_clib.py::test_getitem <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 14%] tests/test_clib.py::test_create_destroy_session <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 14%] tests/test_clib.py::test_create_session_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 15%] tests/test_clib.py::test_destroy_session_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 15%] tests/test_clib.py::test_call_module <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 15%] tests/test_clib.py::test_call_module_invalid_arguments <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 16%] tests/test_clib.py::test_call_module_invalid_name <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 16%] tests/test_clib.py::test_call_module_error_message <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py FAILED [ 16%] tests/test_clib.py::test_method_no_session <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 17%] tests/test_clib.py::test_parse_constant_single <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 17%] tests/test_clib.py::test_parse_constant_composite <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 18%] tests/test_clib.py::test_parse_constant_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 18%] tests/test_clib.py::test_create_data_dataset <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 18%] tests/test_clib.py::test_create_data_grid_dim <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 19%] tests/test_clib.py::test_create_data_grid_range <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 19%] tests/test_clib.py::test_create_data_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 19%] tests/test_clib.py::test_put_vector <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 20%] tests/test_clib.py::test_put_vector_invalid_dtype <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 20%] tests/test_clib.py::test_put_vector_wrong_column <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 21%] tests/test_clib.py::test_put_vector_2d_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 21%] tests/test_clib.py::test_put_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 21%] tests/test_clib.py::test_put_matrix_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 22%] tests/test_clib.py::test_put_matrix_grid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 22%] tests/test_clib.py::test_virtual_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 22%] tests/test_clib.py::test_virtual_file_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 23%] tests/test_clib.py::test_virtual_file_bad_direction <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 23%] tests/test_clib.py::test_virtualfile_from_vectors <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 24%] tests/test_clib.py::test_virtualfile_from_vectors_transpose <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 24%] tests/test_clib.py::test_virtualfile_from_vectors_diff_size <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 24%] tests/test_clib.py::test_virtualfile_from_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 25%] tests/test_clib.py::test_virtualfile_from_matrix_slice <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 25%] tests/test_clib.py::test_virtualfile_from_vectors_pandas <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 25%] tests/test_clib.py::test_virtualfile_from_vectors_arraylike <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 26%] tests/test_clib.py::test_extract_region_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 26%] tests/test_clib.py::test_extract_region_two_figures <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 27%] tests/test_clib.py::test_write_data_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 27%] tests/test_clib.py::test_dataarray_to_matrix_works <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 27%] tests/test_clib.py::test_dataarray_to_matrix_negative_x_increment <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 28%] tests/test_clib.py::test_dataarray_to_matrix_negative_y_increment <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 28%] tests/test_clib.py::test_dataarray_to_matrix_negative_x_and_y_increment <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 28%] tests/test_clib.py::test_dataarray_to_matrix_dims_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 29%] tests/test_clib.py::test_dataarray_to_matrix_inc_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 29%] tests/test_clib.py::test_get_default <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 30%] tests/test_clib.py::test_get_default_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 30%] tests/test_clib.py::test_info_dict <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 30%] tests/test_clib.py::test_fails_for_wrong_version <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py PASSED [ 31%] tests/test_clib_loading.py::test_check_libgmt <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib_loading.py PASSED [ 31%] tests/test_clib_loading.py::test_load_libgmt <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib_loading.py PASSED [ 31%] tests/test_clib_loading.py::test_load_libgmt_fail <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib_loading.py PASSED [ 32%] tests/test_clib_loading.py::test_clib_names <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib_loading.py PASSED [ 32%] tests/test_coast.py::test_coast <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_coast.py PASSED [ 33%] tests/test_coast.py::test_coast_iceland <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_coast.py FAILED [ 33%] tests/test_coast.py::test_coast_aliases <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_coast.py PASSED [ 33%] tests/test_coast.py::test_coast_world_mercator <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_coast.py PASSED [ 34%] tests/test_colorbar.py::test_colorbar_using_paper_coordinates <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 34%] tests/test_colorbar.py::test_colorbar_using_paper_coordinates_horizontal <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 34%] tests/test_colorbar.py::test_colorbar_positioned_using_map_coordinates <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 35%] tests/test_colorbar.py::test_colorbar_positioned_using_justification_code <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py FAILED [ 35%] tests/test_colorbar.py::test_colorbar_positioned_using_normalized_coords <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 36%] tests/test_colorbar.py::test_colorbar_box <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 36%] tests/test_colorbar.py::test_colorbar_box_with_pen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 36%] tests/test_colorbar.py::test_colorbar_box_with_fill <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 37%] tests/test_colorbar.py::test_colorbar_box_with_clearance <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 37%] tests/test_colorbar.py::test_colorbar_box_with_secondary_border <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 37%] tests/test_colorbar.py::test_colorbar_box_with_rounded_corners <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 38%] tests/test_colorbar.py::test_colorbar_box_with_offset_background <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 38%] tests/test_colorbar.py::test_colorbar_truncated_to_zlow_zhigh <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 39%] tests/test_colorbar.py::test_colorbar_scaled_z_values <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_colorbar.py PASSED [ 39%] tests/test_config.py::test_config <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py FAILED [ 39%] tests/test_config.py::test_config_font_one <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py FAILED [ 40%] tests/test_config.py::test_config_font_annot <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py FAILED [ 40%] tests/test_config.py::test_config_format_time_map <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 40%] tests/test_config.py::test_config_map_annot_offset <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 41%] tests/test_config.py::test_config_map_grid_cross_size <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 41%] tests/test_config.py::test_config_map_grid_pen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 42%] tests/test_config.py::test_config_map_tick_length <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 42%] tests/test_config.py::test_config_map_tick_pen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_config.py PASSED [ 42%] tests/test_contour.py::test_contour_fail_no_data <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_contour.py PASSED [ 43%] tests/test_contour.py::test_contour_vec <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_contour.py PASSED [ 43%] tests/test_contour.py::test_contour_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_contour.py PASSED [ 43%] tests/test_contour.py::test_contour_from_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_contour.py PASSED [ 44%] tests/test_datasets.py::test_japan_quakes <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py PASSED [ 44%] tests/test_datasets.py::test_ocean_ridge_points <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py PASSED [ 45%] tests/test_datasets.py::test_sample_bathymetry <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py PASSED [ 45%] tests/test_datasets.py::test_usgs_quakes <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py PASSED [ 45%] tests/test_datasets.py::test_earth_relief_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py PASSED [ 46%] tests/test_datasets.py::test_earth_relief_01d <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py FAILED [ 46%] tests/test_datasets.py::test_earth_relief_30m <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py FAILED [ 46%] tests/test_figure.py::test_figure_region <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 47%] tests/test_figure.py::test_figure_region_multiple <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 47%] tests/test_figure.py::test_figure_region_country_codes <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 48%] tests/test_figure.py::test_figure_savefig_exists <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 48%] tests/test_figure.py::test_figure_savefig_transparent <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 48%] tests/test_figure.py::test_figure_savefig <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 49%] tests/test_figure.py::test_figure_show <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 49%] tests/test_figure.py::test_shift_origin <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_figure.py PASSED [ 50%] tests/test_grdcontour.py::test_grdcontour <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py FAILED [ 50%] tests/test_grdcontour.py::test_grdcontour_labels <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py FAILED [ 50%] tests/test_grdcontour.py::test_grdcontour_slice <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py FAILED [ 51%] tests/test_grdcontour.py::test_grdcontour_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py FAILED [ 51%] tests/test_grdcontour.py::test_grdcontour_interval_file_full_opts <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py FAILED [ 51%] tests/test_grdcontour.py::test_grdcontour_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcontour.py PASSED [ 52%] tests/test_grdcut.py::test_grdcut_file_in_file_out <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py FAILED [ 52%] tests/test_grdcut.py::test_grdcut_file_in_dataarray_out <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py FAILED [ 53%] tests/test_grdcut.py::test_grdcut_dataarray_in_file_out <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py PASSED [ 53%] tests/test_grdcut.py::test_grdcut_dataarray_in_dataarray_out <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py PASSED [ 53%] tests/test_grdcut.py::test_grdcut_dataarray_in_fail <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py PASSED [ 54%] tests/test_grdcut.py::test_grdcut_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py PASSED [ 54%] tests/test_grdimage.py::test_grdimage <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdimage.py FAILED [ 54%] tests/test_grdimage.py::test_grdimage_slice <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdimage.py FAILED [ 55%] tests/test_grdimage.py::test_grdimage_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdimage.py FAILED [ 55%] tests/test_grdimage.py::test_grdimage_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdimage.py PASSED [ 56%] tests/test_grdinfo.py::test_grdinfo <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdinfo.py FAILED [ 56%] tests/test_grdinfo.py::test_grdinfo_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdinfo.py FAILED [ 56%] tests/test_grdinfo.py::test_grdinfo_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdinfo.py PASSED [ 57%] tests/test_grdtrack.py::test_grdtrack_input_dataframe_and_dataarray <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py FAILED [ 57%] tests/test_grdtrack.py::test_grdtrack_input_csvfile_and_dataarray <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py FAILED [ 57%] tests/test_grdtrack.py::test_grdtrack_input_dataframe_and_ncfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py FAILED [ 58%] tests/test_grdtrack.py::test_grdtrack_input_csvfile_and_ncfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py FAILED [ 58%] tests/test_grdtrack.py::test_grdtrack_wrong_kind_of_points_input <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py PASSED [ 59%] tests/test_grdtrack.py::test_grdtrack_wrong_kind_of_grid_input <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py PASSED [ 59%] tests/test_grdtrack.py::test_grdtrack_without_newcolname_setting <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py PASSED [ 59%] tests/test_grdtrack.py::test_grdtrack_without_outfile_setting <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py PASSED [ 60%] tests/test_grdview.py::test_grdview_grid_dataarray <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 60%] tests/test_grdview.py::test_grdview_grid_file_with_region_subset <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 60%] tests/test_grdview.py::test_grdview_wrong_kind_of_grid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py PASSED [ 61%] tests/test_grdview.py::test_grdview_with_perspective <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 61%] tests/test_grdview.py::test_grdview_with_perspective_and_zscale <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 62%] tests/test_grdview.py::test_grdview_with_perspective_and_zsize <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 62%] tests/test_grdview.py::test_grdview_with_cmap_for_image_plot <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 62%] tests/test_grdview.py::test_grdview_with_cmap_for_surface_monochrome_plot <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 63%] tests/test_grdview.py::test_grdview_with_cmap_for_perspective_surface_plot <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 63%] tests/test_grdview.py::test_grdview_on_a_plane <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 63%] tests/test_grdview.py::test_grdview_on_a_plane_with_colored_frontal_facade <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 64%] tests/test_grdview.py::test_grdview_with_perspective_and_zaxis_frame <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 64%] tests/test_grdview.py::test_grdview_surface_plot_styled_with_contourpen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 65%] tests/test_grdview.py::test_grdview_surface_mesh_plot_styled_with_meshpen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 65%] tests/test_grdview.py::test_grdview_on_a_plane_styled_with_facadepen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 65%] tests/test_grdview.py::test_grdview_drapegrid_dataarray <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py FAILED [ 66%] tests/test_grdview.py::test_grdview_wrong_kind_of_drapegrid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdview.py PASSED [ 66%] tests/test_helpers.py::test_data_kind_fails[None-None-None] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 66%] tests/test_helpers.py::test_data_kind_fails[data.txt-x1-y1] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 67%] tests/test_helpers.py::test_data_kind_fails[data.txt-x2-None] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 67%] tests/test_helpers.py::test_data_kind_fails[data.txt-None-y3] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 68%] tests/test_helpers.py::test_data_kind_fails[None-x4-None] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 68%] tests/test_helpers.py::test_data_kind_fails[None-None-y5] <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 68%] tests/test_helpers.py::test_unique_name <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 69%] tests/test_helpers.py::test_kwargs_to_strings_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 69%] tests/test_helpers.py::test_kwargs_to_strings_no_bools <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 69%] tests/test_helpers.py::test_gmttempfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 70%] tests/test_helpers.py::test_gmttempfile_unique <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 70%] tests/test_helpers.py::test_gmttempfile_prefix_suffix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 71%] tests/test_helpers.py::test_gmttempfile_read <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_helpers.py PASSED [ 71%] tests/test_image.py::test_image <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_image.py PASSED [ 71%] tests/test_info.py::test_info <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 72%] tests/test_info.py::test_info_per_column <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 72%] tests/test_info.py::test_info_spacing <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 72%] tests/test_info.py::test_info_per_column_spacing <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 73%] tests/test_info.py::test_info_nearest_multiple <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 73%] tests/test_info.py::test_info_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_info.py PASSED [ 74%] tests/test_legend.py::test_legend_position <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_legend.py PASSED [ 74%] tests/test_legend.py::test_legend_default_position <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_legend.py PASSED [ 74%] tests/test_legend.py::test_legend_entries <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_legend.py FAILED [ 75%] tests/test_legend.py::test_legend_specfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_legend.py PASSED [ 75%] tests/test_legend.py::test_legend_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_legend.py PASSED [ 75%] tests/test_logo.py::test_logo <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_logo.py PASSED [ 76%] tests/test_logo.py::test_logo_on_a_map <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_logo.py PASSED [ 76%] tests/test_logo.py::test_logo_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_logo.py PASSED [ 77%] tests/test_makecpt.py::test_makecpt_to_plot_points <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py PASSED [ 77%] tests/test_makecpt.py::test_makecpt_to_plot_grid <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 77%] tests/test_makecpt.py::test_makecpt_to_plot_grid_scaled_with_series <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 78%] tests/test_makecpt.py::test_makecpt_output_to_cpt_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py PASSED [ 78%] tests/test_makecpt.py::test_makecpt_blank_output <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py PASSED [ 78%] tests/test_makecpt.py::test_makecpt_invalid_output <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py PASSED [ 79%] tests/test_makecpt.py::test_makecpt_truncated_to_zlow_zhigh <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 79%] tests/test_makecpt.py::test_makecpt_truncated_at_zlow_only <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 80%] tests/test_makecpt.py::test_makecpt_truncated_at_zhigh_only <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 80%] tests/test_makecpt.py::test_makecpt_reverse_color_only <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 80%] tests/test_makecpt.py::test_makecpt_reverse_zsign_only <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 81%] tests/test_makecpt.py::test_makecpt_reverse_color_and_zsign <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 81%] tests/test_makecpt.py::test_makecpt_continuous <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_makecpt.py FAILED [ 81%] tests/test_plot.py::test_plot_red_circles <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 82%] tests/test_plot.py::test_plot_fail_no_data <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 82%] tests/test_plot.py::test_plot_fail_size_color <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 83%] tests/test_plot.py::test_plot_projection <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 83%] tests/test_plot.py::test_plot_colors <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 83%] tests/test_plot.py::test_plot_sizes <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 84%] tests/test_plot.py::test_plot_colors_sizes <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 84%] tests/test_plot.py::test_plot_colors_sizes_proj <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 84%] tests/test_plot.py::test_plot_matrix <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 85%] tests/test_plot.py::test_plot_matrix_color <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 85%] tests/test_plot.py::test_plot_from_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 86%] tests/test_plot.py::test_plot_vectors <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 86%] tests/test_plot.py::test_plot_lines_with_arrows <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 86%] tests/test_plot.py::test_plot_scalar_xy <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_plot.py PASSED [ 87%] tests/test_psconvert.py::test_psconvert <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_psconvert.py PASSED [ 87%] tests/test_psconvert.py::test_psconvert_twice <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_psconvert.py PASSED [ 87%] tests/test_psconvert.py::test_psconvert_int_options <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_psconvert.py PASSED [ 88%] tests/test_psconvert.py::test_psconvert_aliases <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_psconvert.py PASSED [ 88%] tests/test_session_management.py::test_begin_end <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_session_management.py PASSED [ 89%] tests/test_session_management.py::test_gmt_compat_6_is_applied <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_session_management.py PASSED [ 89%] tests/test_sphinx_gallery.py::test_pygmtscraper <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_sphinx_gallery.py SKIPPED [ 89%] tests/test_surface.py::test_surface_input_file <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 90%] tests/test_surface.py::test_surface_input_data_array <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 90%] tests/test_surface.py::test_surface_input_xyz <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 90%] tests/test_surface.py::test_surface_input_xy_no_z <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 91%] tests/test_surface.py::test_surface_wrong_kind_of_input <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 91%] tests/test_surface.py::test_surface_with_outfile_param <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 92%] tests/test_surface.py::test_surface_short_aliases <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_surface.py PASSED [ 92%] tests/test_text.py::test_text_single_line_of_text <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 92%] tests/test_text.py::test_text_multiple_lines_of_text <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 93%] tests/test_text.py::test_text_without_text_input <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 93%] tests/test_text.py::test_text_input_single_filename <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 93%] tests/test_text.py::test_text_input_remote_filename <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 94%] tests/test_text.py::test_text_input_multiple_filenames <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 94%] tests/test_text.py::test_text_nonexistent_filename <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 95%] tests/test_text.py::test_text_position <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 95%] tests/test_text.py::test_text_xy_with_position_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 95%] tests/test_text.py::test_text_position_offset_with_line <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 96%] tests/test_text.py::test_text_angle_30 <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 96%] tests/test_text.py::test_text_font_bold <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 96%] tests/test_text.py::test_text_fill <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 97%] tests/test_text.py::test_text_pen <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 97%] tests/test_text.py::test_text_round_clearance <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 98%] tests/test_text.py::test_text_justify_bottom_right_and_top_left <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 98%] tests/test_text.py::test_text_justify_parsed_from_textfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 98%] tests/test_text.py::test_text_angle_font_justify_from_textfile <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_text.py PASSED [ 99%] tests/test_which.py::test_which <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_which.py PASSED [ 99%] tests/test_which.py::test_which_fails <- ../../../../../anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_which.py PASSED [100%] ============================================================================================================================ FAILURES ============================================================================================================================= _______________________________________________________________________________________________________ [doctest] pygmt.clib.conversion.dataarray_to_matrix _______________________________________________________________________________________________________ 042 If the grid has more than two dimensions or variable grid spacing. 043 044 Examples 045 -------- 046 047 >>> from pygmt.datasets import load_earth_relief 048 >>> # Use the global Earth relief grid with 1 degree spacing 049 >>> grid = load_earth_relief(resolution='01d') 050 >>> matrix, region, inc = dataarray_to_matrix(grid) 051 >>> print(region) Expected: [-180.0, 180.0, -90.0, 90.0] Got: [-179.5, 179.5, -89.5, 89.5] /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/conversion.py:51: DocTestFailure ______________________________________________________________________________________________________________ [doctest] pygmt.clib.session.Session _______________________________________________________________________________________________________________ 093 -------- 094 095 >>> from pygmt.datasets import load_earth_relief 096 >>> from pygmt.helpers import GMTTempFile 097 >>> grid = load_earth_relief() 098 >>> type(grid) 099 100 >>> # Create a session and destroy it automatically when exiting the "with" 101 >>> # block. 102 >>> with Session() as ses: Expected: -180 180 -90 90 -8592.5 5559 1 1 361 181 Got: -179.5 179.5 -89.5 89.5 -8182 5651.5 1 1 360 180 0 0 /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py:102: DocTestFailure ___________________________________________________________________________________________________ [doctest] pygmt.clib.session.Session.virtualfile_from_grid ____________________________________________________________________________________________________ 271 The name of virtual file. Pass this as a file name argument to a 272 GMT module. 273 274 Examples 275 -------- 276 277 >>> from pygmt.datasets import load_earth_relief 278 >>> from pygmt.helpers import GMTTempFile 279 >>> data = load_earth_relief(resolution='01d') 280 >>> print(data.shape) Expected: (181, 361) Got: (180, 360) /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py:280: DocTestFailure _______________________________________________________________________________________________________________________ test_basemap_polar ________________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1958, 1822) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpadq1tydr/baseline-test_basemap_polar.png Actual shape: (1957, 1822) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpadq1tydr/test_basemap_polar.png _________________________________________________________________________________________________________________ test_call_module_error_message __________________________________________________________________________________________________________________ def test_call_module_error_message(): "Check is the GMT error message was captured." with clib.Session() as lib: try: > lib.call_module("info", "bogus-data.bla") /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py:159: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , module = 'info', args = 'bogus-data.bla' def call_module(self, module, args): """ Call a GMT module with the given arguments. Makes a call to ``GMT_Call_Module`` from the C API using mode ``GMT_MODULE_CMD`` (arguments passed as a single string). Most interactions with the C API are done through this function. Parameters ---------- module : str Module name (``'coast'``, ``'basemap'``, etc). args : str String with the command line arguments that will be passed to the module (for example, ``'-R0/5/0/10 -JM'``). Raises ------ GMTCLibError If the returned status code of the function is non-zero. """ c_call_module = self.get_libgmt_func( "GMT_Call_Module", argtypes=[ctp.c_void_p, ctp.c_char_p, ctp.c_int, ctp.c_void_p], restype=ctp.c_int, ) mode = self["GMT_MODULE_CMD"] status = c_call_module( self.session_pointer, module.encode(), mode, args.encode() ) if status != 0: > raise GMTCLibError( "Module '{}' failed with status code {}:\n{}".format( module, status, self._error_message ) ) E pygmt.exceptions.GMTCLibError: Module 'info' failed with status code 71: E gmtinfo [ERROR]: Cannot find file bogus-data.bla /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/clib/session.py:498: GMTCLibError During handling of the above exception, another exception occurred: def test_call_module_error_message(): "Check is the GMT error message was captured." with clib.Session() as lib: try: lib.call_module("info", "bogus-data.bla") except GMTCLibError as error: msg = "\n".join( [ "Module 'info' failed with status code 71:", "gmtinfo [ERROR]: Error for input file: No such file (bogus-data.bla)", ] ) > assert str(error) == msg E assert ("Module 'info' failed with status code 71:\n"\n 'gmtinfo [ERROR]: Cannot find file bogus-data.bla') == ("Module 'info' failed with status code 71:\n"\n 'gmtinfo [ERROR]: Error for input file: No such file (bogus-data.bla)') E Module 'info' failed with status code 71: E - gmtinfo [ERROR]: Error for input file: No such file (bogus-data.bla) E + gmtinfo [ERROR]: Cannot find file bogus-data.bla /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_clib.py:167: AssertionError ---------------------------------------------------------------------------------------------------------------------- Captured stderr call ----------------------------------------------------------------------------------------------------------------------- gmtinfo [ERROR]: Cannot find file bogus-data.bla _______________________________________________________________________________________________________________________ test_coast_iceland ________________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 2.1592998456264336 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpxcaci3oz/baseline-test_coast_iceland.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpxcaci3oz/test_coast_iceland.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpxcaci3oz/test_coast_iceland-failed-diff.png Tolerance: 2 ________________________________________________________________________________________________________ test_colorbar_positioned_using_justification_code ________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 15.679802537698418 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpy4ttafin/baseline-test_colorbar_positioned_using_justification_code.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpy4ttafin/test_colorbar_positioned_using_justification_code.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpy4ttafin/test_colorbar_positioned_using_justification_code-failed-diff.png Tolerance: 2 ___________________________________________________________________________________________________________________________ test_config ___________________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 7.013266407484722 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmplh3taghh/baseline-test_config.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmplh3taghh/test_config.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmplh3taghh/test_config-failed-diff.png Tolerance: 2 ______________________________________________________________________________________________________________________ test_config_font_one _______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1526, 1540) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpd_syom1_/baseline-test_config_font_one.png Actual shape: (1531, 1545) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpd_syom1_/test_config_font_one.png _____________________________________________________________________________________________________________________ test_config_font_annot ______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1161, 1168) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpwi_h0o1v/baseline-test_config_font_annot.png Actual shape: (1165, 1172) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpwi_h0o1v/test_config_font_annot.png ______________________________________________________________________________________________________________________ test_earth_relief_01d ______________________________________________________________________________________________________________________ def test_earth_relief_01d(): "Test some properties of the earth relief 01d data" data = load_earth_relief(resolution="01d") > assert data.shape == (181, 361) E assert (180, 360) == (181, 361) E At index 0 diff: 180 != 181 E Full diff: E - (181, 361) E ? ^ ^ E + (180, 360) E ? ^ ^ /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py:74: AssertionError ______________________________________________________________________________________________________________________ test_earth_relief_30m ______________________________________________________________________________________________________________________ def test_earth_relief_30m(): "Test some properties of the earth relief 30m data" data = load_earth_relief(resolution="30m") > assert data.shape == (361, 721) E assert (360, 720) == (361, 721) E At index 0 diff: 360 != 361 E Full diff: E - (361, 721) E ? ^ ^ E + (360, 720) E ? ^ ^ /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_datasets.py:84: AssertionError ---------------------------------------------------------------------------------------------------------------------- Captured stderr call ----------------------------------------------------------------------------------------------------------------------- gmtwhich [NOTICE]: Remote data courtesy of GMT data server OCEANIA [https://oceania.generic-mapping-tools.org] gmtwhich [NOTICE]: Earth Relief at 30x30 arc minutes from Gaussian Cartesian filtering (55 km fullwidth) of SRTM15+V2.1 [Tozer et al., 2019]. gmtwhich [NOTICE]: -> Download grid file [395K]: earth_relief_30m_p.grd _________________________________________________________________________________________________________________________ test_grdcontour _________________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1795, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpnta9dz9d/baseline-test_grdcontour.png Actual shape: (1794, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpnta9dz9d/test_grdcontour.png _____________________________________________________________________________________________________________________ test_grdcontour_labels ______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1795, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp7dtpwm5q/baseline-test_grdcontour_labels.png Actual shape: (1794, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp7dtpwm5q/test_grdcontour_labels.png ______________________________________________________________________________________________________________________ test_grdcontour_slice ______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1801, 313) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpxyc84zg6/baseline-test_grdcontour_slice.png Actual shape: (1801, 309) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpxyc84zg6/test_grdcontour_slice.png ______________________________________________________________________________________________________________________ test_grdcontour_file _______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (3000, 1652) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpyik9d1ae/baseline-test_grdcontour_file.png Actual shape: (2994, 1652) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpyik9d1ae/test_grdcontour_file.png _____________________________________________________________________________________________________________ test_grdcontour_interval_file_full_opts _____________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 57.021765942941926 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmppcai0yyq/baseline-test_grdcontour_interval_file_full_opts.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmppcai0yyq/test_grdcontour_interval_file_full_opts.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmppcai0yyq/test_grdcontour_interval_file_full_opts-failed-diff.png Tolerance: 2 __________________________________________________________________________________________________________________ test_grdcut_file_in_file_out ___________________________________________________________________________________________________________________ def test_grdcut_file_in_file_out(): "grduct an input grid file, and output to a grid file" with GMTTempFile(suffix=".nc") as tmpfile: result = grdcut("@earth_relief_01d", outgrid=tmpfile.name, region="0/180/0/90") assert result is None # return value is None assert os.path.exists(path=tmpfile.name) # check that outgrid exists result = grdinfo(tmpfile.name, C=True) > assert result == "0 180 0 90 -8592.5 5559 1 1 181 91\n" E AssertionError: assert '0 180 0 90 -8182 5651.5 1 1 180 90 1 1\n' == '0 180 0 90 -8592.5 5559 1 1 181 91\n' E - 0 180 0 90 -8592.5 5559 1 1 181 91 E + 0 180 0 90 -8182 5651.5 1 1 180 90 1 1 /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py:22: AssertionError ________________________________________________________________________________________________________________ test_grdcut_file_in_dataarray_out ________________________________________________________________________________________________________________ def test_grdcut_file_in_dataarray_out(): "grdcut an input grid file, and output as DataArray" outgrid = grdcut("@earth_relief_01d", region="0/180/0/90") assert isinstance(outgrid, xr.DataArray) # check information of the output grid # the '@earth_relief_01d' is in pixel registration, so the grid range is # not exactly 0/180/0/90 > assert outgrid.coords["lat"].data.min() == 0.0 E assert 0.5 == 0.0 E +0.5 E -0.0 /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdcut.py:32: AssertionError __________________________________________________________________________________________________________________________ test_grdimage __________________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpyab_pm_9/baseline-test_grdimage.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpyab_pm_9/test_grdimage.png _______________________________________________________________________________________________________________________ test_grdimage_slice _______________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 313) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp13aadxic/baseline-test_grdimage_slice.png Actual shape: (1800, 309) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp13aadxic/test_grdimage_slice.png _______________________________________________________________________________________________________________________ test_grdimage_file ________________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 18.437474628436362 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpqf2fju2f/baseline-test_grdimage_file.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpqf2fju2f/test_grdimage_file.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpqf2fju2f/test_grdimage_file-failed-diff.png Tolerance: 2 __________________________________________________________________________________________________________________________ test_grdinfo ___________________________________________________________________________________________________________________________ def test_grdinfo(): "Make sure grd info works as expected" grid = load_earth_relief() result = grdinfo(grid, L=0, C="n") > assert result.strip() == "-180 180 -90 90 -8592.5 5559 1 1 361 181" E AssertionError: assert '-179.5 179.5 -89.5 89.5 -8182 5651.5 1 1 360 180 0 0' == '-180 180 -90 90 -8592.5 5559 1 1 361 181' E - -180 180 -90 90 -8592.5 5559 1 1 361 181 E + -179.5 179.5 -89.5 89.5 -8182 5651.5 1 1 360 180 0 0 /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdinfo.py:16: AssertionError ________________________________________________________________________________________________________________________ test_grdinfo_file ________________________________________________________________________________________________________________________ def test_grdinfo_file(): "Test grdinfo with file input" result = grdinfo("@earth_relief_01d", L=0, C="n") > assert result.strip() == "-180 180 -90 90 -8592.5 5559 1 1 361 181" E AssertionError: assert '-180 180 -90 90 -8182 5651.5 1 1 360 180 1 1' == '-180 180 -90 90 -8592.5 5559 1 1 361 181' E - -180 180 -90 90 -8592.5 5559 1 1 361 181 E ? ^^ ----- ^ E + -180 180 -90 90 -8182 5651.5 1 1 360 180 1 1 E ? ++++ ^^^ ^ ++ ++ /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdinfo.py:22: AssertionError ___________________________________________________________________________________________________________ test_grdtrack_input_dataframe_and_dataarray ___________________________________________________________________________________________________________ def test_grdtrack_input_dataframe_and_dataarray(): """ Run grdtrack by passing in a pandas.DataFrame and xarray.DataArray as inputs """ dataframe = load_ocean_ridge_points() dataarray = load_earth_relief().sel(lat=slice(-49, -42), lon=slice(-118, -107)) output = grdtrack(points=dataframe, grid=dataarray, newcolname="bathymetry") assert isinstance(output, pd.DataFrame) assert output.columns.to_list() == ["longitude", "latitude", "bathymetry"] > npt.assert_allclose(output.iloc[0], [-110.9536, -42.2489, -2797.394987]) E AssertionError: E Not equal to tolerance rtol=1e-07, atol=0 E E Mismatched elements: 3 / 3 (100%) E Max absolute difference: 4050953.226623 E Max relative difference: 1448.11628156 E x: array([-1.117309e+02, -4.317060e+01, -4.053751e+06]) E y: array([ -110.9536 , -42.2489 , -2797.394987]) /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py:31: AssertionError ---------------------------------------------------------------------------------------------------------------------- Captured stderr call ----------------------------------------------------------------------------------------------------------------------- grdtrack [WARNING]: Some input points were outside the grid domain(s). ____________________________________________________________________________________________________________ test_grdtrack_input_csvfile_and_dataarray ____________________________________________________________________________________________________________ def test_grdtrack_input_csvfile_and_dataarray(): """ Run grdtrack by passing in a csvfile and xarray.DataArray as inputs """ csvfile = which("@ridge.txt", download="c") dataarray = load_earth_relief().sel(lat=slice(-49, -42), lon=slice(-118, -107)) try: output = grdtrack(points=csvfile, grid=dataarray, outfile=TEMP_TRACK) assert output is None # check that output is None since outfile is set assert os.path.exists(path=TEMP_TRACK) # check that outfile exists at path track = pd.read_csv(TEMP_TRACK, sep="\t", header=None, comment=">") > npt.assert_allclose(track.iloc[0], [-110.9536, -42.2489, -2797.394987]) E AssertionError: E Not equal to tolerance rtol=1e-07, atol=0 E E Mismatched elements: 3 / 3 (100%) E Max absolute difference: 3.77560601e+22 E Max relative difference: 1.34968642e+19 E x: array([-1.117309e+02, -4.317060e+01, -3.775606e+22]) E y: array([ -110.9536 , -42.2489 , -2797.394987]) /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py:49: AssertionError ---------------------------------------------------------------------------------------------------------------------- Captured stderr call ----------------------------------------------------------------------------------------------------------------------- grdtrack [WARNING]: Some input points were outside the grid domain(s). ____________________________________________________________________________________________________________ test_grdtrack_input_dataframe_and_ncfile _____________________________________________________________________________________________________________ def test_grdtrack_input_dataframe_and_ncfile(): """ Run grdtrack by passing in a pandas.DataFrame and netcdf file as inputs """ dataframe = load_ocean_ridge_points() ncfile = which("@earth_relief_01d", download="c") output = grdtrack(points=dataframe, grid=ncfile, newcolname="bathymetry") assert isinstance(output, pd.DataFrame) assert output.columns.to_list() == ["longitude", "latitude", "bathymetry"] > npt.assert_allclose(output.iloc[0], [-32.2971, 37.4118, -1686.748899]) E AssertionError: E Not equal to tolerance rtol=1e-07, atol=0 E E Mismatched elements: 1 / 3 (33.3%) E Max absolute difference: 252.99934649 E Max relative difference: 0.1499923 E x: array([ -32.2971 , 37.4118 , -1939.748245]) E y: array([ -32.2971 , 37.4118 , -1686.748899]) /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py:66: AssertionError _____________________________________________________________________________________________________________ test_grdtrack_input_csvfile_and_ncfile ______________________________________________________________________________________________________________ def test_grdtrack_input_csvfile_and_ncfile(): """ Run grdtrack by passing in a csvfile and netcdf file as inputs """ csvfile = which("@ridge.txt", download="c") ncfile = which("@earth_relief_01d", download="c") try: output = grdtrack(points=csvfile, grid=ncfile, outfile=TEMP_TRACK) assert output is None # check that output is None since outfile is set assert os.path.exists(path=TEMP_TRACK) # check that outfile exists at path track = pd.read_csv(TEMP_TRACK, sep="\t", header=None, comment=">") > npt.assert_allclose(track.iloc[0], [-32.2971, 37.4118, -1686.748899]) E AssertionError: E Not equal to tolerance rtol=1e-07, atol=0 E E Mismatched elements: 1 / 3 (33.3%) E Max absolute difference: 252.99934649 E Max relative difference: 0.1499923 E x: array([ -32.2971 , 37.4118 , -1939.748245]) E y: array([ -32.2971 , 37.4118 , -1686.748899]) /Users/locupe/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/tests/test_grdtrack.py:84: AssertionError ___________________________________________________________________________________________________________________ test_grdview_grid_dataarray ___________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 40.16190604322967 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpn46juxbg/baseline-test_grdview_grid_dataarray.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpn46juxbg/test_grdview_grid_dataarray.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpn46juxbg/test_grdview_grid_dataarray-failed-diff.png Tolerance: 2 ____________________________________________________________________________________________________________ test_grdview_grid_file_with_region_subset ____________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1772, 1772) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmptmasslyu/baseline-test_grdview_grid_file_with_region_subset.png Actual shape: (1772, 760) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmptmasslyu/test_grdview_grid_file_with_region_subset.png __________________________________________________________________________________________________________________ test_grdview_with_perspective __________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 49.520272872052345 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpe49fxcp9/baseline-test_grdview_with_perspective.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpe49fxcp9/test_grdview_with_perspective.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpe49fxcp9/test_grdview_with_perspective-failed-diff.png Tolerance: 2 ____________________________________________________________________________________________________________ test_grdview_with_perspective_and_zscale _____________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2507, 1359) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpbak1ehxa/baseline-test_grdview_with_perspective_and_zscale.png Actual shape: (2507, 1341) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpbak1ehxa/test_grdview_with_perspective_and_zscale.png _____________________________________________________________________________________________________________ test_grdview_with_perspective_and_zsize _____________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2507, 1566) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpcvze31pd/baseline-test_grdview_with_perspective_and_zsize.png Actual shape: (2507, 1555) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpcvze31pd/test_grdview_with_perspective_and_zsize.png ______________________________________________________________________________________________________________ test_grdview_with_cmap_for_image_plot ______________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 82.90239290987333 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmphiwwtef5/baseline-test_grdview_with_cmap_for_image_plot.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmphiwwtef5/test_grdview_with_cmap_for_image_plot.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmphiwwtef5/test_grdview_with_cmap_for_image_plot-failed-diff.png Tolerance: 2 _______________________________________________________________________________________________________ test_grdview_with_cmap_for_surface_monochrome_plot ________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 71.67456522119535 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpumox916_/baseline-test_grdview_with_cmap_for_surface_monochrome_plot.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpumox916_/test_grdview_with_cmap_for_surface_monochrome_plot.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpumox916_/test_grdview_with_cmap_for_surface_monochrome_plot-failed-diff.png Tolerance: 2 _______________________________________________________________________________________________________ test_grdview_with_cmap_for_perspective_surface_plot _______________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2506, 1358) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpvnf10u9h/baseline-test_grdview_with_cmap_for_perspective_surface_plot.png Actual shape: (2506, 1340) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpvnf10u9h/test_grdview_with_cmap_for_perspective_surface_plot.png _____________________________________________________________________________________________________________________ test_grdview_on_a_plane _____________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2509, 1675) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp5mi614b3/baseline-test_grdview_on_a_plane.png Actual shape: (2509, 1691) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp5mi614b3/test_grdview_on_a_plane.png _______________________________________________________________________________________________________ test_grdview_on_a_plane_with_colored_frontal_facade _______________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2509, 1676) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp_ku0tx8u/baseline-test_grdview_on_a_plane_with_colored_frontal_facade.png Actual shape: (2509, 1692) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp_ku0tx8u/test_grdview_on_a_plane_with_colored_frontal_facade.png __________________________________________________________________________________________________________ test_grdview_with_perspective_and_zaxis_frame __________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2566, 1636) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpokoupyvh/baseline-test_grdview_with_perspective_and_zaxis_frame.png Actual shape: (2566, 1626) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpokoupyvh/test_grdview_with_perspective_and_zaxis_frame.png ________________________________________________________________________________________________________ test_grdview_surface_plot_styled_with_contourpen _________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 95.81921012966873 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpeipjeyk9/baseline-test_grdview_surface_plot_styled_with_contourpen.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpeipjeyk9/test_grdview_surface_plot_styled_with_contourpen.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpeipjeyk9/test_grdview_surface_plot_styled_with_contourpen-failed-diff.png Tolerance: 2 _______________________________________________________________________________________________________ test_grdview_surface_mesh_plot_styled_with_meshpen ________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 95.72615837162644 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmph7da99u3/baseline-test_grdview_surface_mesh_plot_styled_with_meshpen.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmph7da99u3/test_grdview_surface_mesh_plot_styled_with_meshpen.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmph7da99u3/test_grdview_surface_mesh_plot_styled_with_meshpen-failed-diff.png Tolerance: 2 __________________________________________________________________________________________________________ test_grdview_on_a_plane_styled_with_facadepen __________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (2508, 1674) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp1ghut5fh/baseline-test_grdview_on_a_plane_styled_with_facadepen.png Actual shape: (2508, 1690) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp1ghut5fh/test_grdview_on_a_plane_styled_with_facadepen.png ________________________________________________________________________________________________________________ test_grdview_drapegrid_dataarray _________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 61.18795003636725 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp5vncaj_d/baseline-test_grdview_drapegrid_dataarray.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp5vncaj_d/test_grdview_drapegrid_dataarray.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp5vncaj_d/test_grdview_drapegrid_dataarray-failed-diff.png Tolerance: 2 _______________________________________________________________________________________________________________________ test_legend_entries _______________________________________________________________________________________________________________________ Error: Image files did not match. RMS Value: 3.7333930043449666 Expected: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpuphow1kw/baseline-test_legend_entries.png Actual: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpuphow1kw/test_legend_entries.png Difference: /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpuphow1kw/test_legend_entries-failed-diff.png Tolerance: 2 ____________________________________________________________________________________________________________________ test_makecpt_to_plot_grid ____________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp8iu7mk5f/baseline-test_makecpt_to_plot_grid.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp8iu7mk5f/test_makecpt_to_plot_grid.png __________________________________________________________________________________________________________ test_makecpt_to_plot_grid_scaled_with_series ___________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpari24ju5/baseline-test_makecpt_to_plot_grid_scaled_with_series.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpari24ju5/test_makecpt_to_plot_grid_scaled_with_series.png ______________________________________________________________________________________________________________ test_makecpt_truncated_to_zlow_zhigh _______________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpes95r11c/baseline-test_makecpt_truncated_to_zlow_zhigh.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpes95r11c/test_makecpt_truncated_to_zlow_zhigh.png _______________________________________________________________________________________________________________ test_makecpt_truncated_at_zlow_only _______________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpzi1dbpx5/baseline-test_makecpt_truncated_at_zlow_only.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpzi1dbpx5/test_makecpt_truncated_at_zlow_only.png ______________________________________________________________________________________________________________ test_makecpt_truncated_at_zhigh_only _______________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp_w0sn3xo/baseline-test_makecpt_truncated_at_zhigh_only.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp_w0sn3xo/test_makecpt_truncated_at_zhigh_only.png _________________________________________________________________________________________________________________ test_makecpt_reverse_color_only _________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpuae7cclp/baseline-test_makecpt_reverse_color_only.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpuae7cclp/test_makecpt_reverse_color_only.png _________________________________________________________________________________________________________________ test_makecpt_reverse_zsign_only _________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmptkwa_fbv/baseline-test_makecpt_reverse_zsign_only.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmptkwa_fbv/test_makecpt_reverse_zsign_only.png ______________________________________________________________________________________________________________ test_makecpt_reverse_color_and_zsign _______________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp2pe_d_o5/baseline-test_makecpt_reverse_color_and_zsign.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmp2pe_d_o5/test_makecpt_reverse_color_and_zsign.png _____________________________________________________________________________________________________________________ test_makecpt_continuous _____________________________________________________________________________________________________________________ Error: Image dimensions did not match. Expected shape: (1800, 900) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpdq63tcfv/baseline-test_makecpt_continuous.png Actual shape: (1800, 902) /var/folders/_3/9z9zj5090_b341bkc7cw74cr0000gq/T/tmpdq63tcfv/test_makecpt_continuous.png ===================================================================================================================== short test summary info ===================================================================================================================== FAILED clib/conversion.py::pygmt.clib.conversion.dataarray_to_matrix FAILED clib/session.py::pygmt.clib.session.Session FAILED clib/session.py::pygmt.clib.session.Session.virtualfile_from_grid FAILED tests/test_basemap.py::test_basemap_polar FAILED tests/test_clib.py::test_call_module_error_message - assert ("Module 'info' failed with status code 71:\n"\n 'gmtinfo [ERROR]: Cannot find file bogus-data.bla') == ("Module 'info' failed with status code 71:\n"\n 'gmtinfo [ERROR]: Error for input fi... FAILED tests/test_coast.py::test_coast_iceland FAILED tests/test_colorbar.py::test_colorbar_positioned_using_justification_code FAILED tests/test_config.py::test_config FAILED tests/test_config.py::test_config_font_one FAILED tests/test_config.py::test_config_font_annot FAILED tests/test_datasets.py::test_earth_relief_01d - assert (180, 360) == (181, 361) FAILED tests/test_datasets.py::test_earth_relief_30m - assert (360, 720) == (361, 721) FAILED tests/test_grdcontour.py::test_grdcontour FAILED tests/test_grdcontour.py::test_grdcontour_labels FAILED tests/test_grdcontour.py::test_grdcontour_slice FAILED tests/test_grdcontour.py::test_grdcontour_file FAILED tests/test_grdcontour.py::test_grdcontour_interval_file_full_opts FAILED tests/test_grdcut.py::test_grdcut_file_in_file_out - AssertionError: assert '0 180 0 90 -8182 5651.5 1 1 180 90 1 1\n' == '0 180 0 90 -8592.5 5559 1 1 181 91\n' FAILED tests/test_grdcut.py::test_grdcut_file_in_dataarray_out - assert 0.5 == 0.0 FAILED tests/test_grdimage.py::test_grdimage FAILED tests/test_grdimage.py::test_grdimage_slice FAILED tests/test_grdimage.py::test_grdimage_file FAILED tests/test_grdinfo.py::test_grdinfo - AssertionError: assert '-179.5 179.5 -89.5 89.5 -8182 5651.5 1 1 360 180 0 0' == '-180 180 -90 90 -8592.5 5559 1 1 361 181' FAILED tests/test_grdinfo.py::test_grdinfo_file - AssertionError: assert '-180 180 -90 90 -8182 5651.5 1 1 360 180 1 1' == '-180 180 -90 90 -8592.5 5559 1 1 361 181' FAILED tests/test_grdtrack.py::test_grdtrack_input_dataframe_and_dataarray - AssertionError: FAILED tests/test_grdtrack.py::test_grdtrack_input_csvfile_and_dataarray - AssertionError: FAILED tests/test_grdtrack.py::test_grdtrack_input_dataframe_and_ncfile - AssertionError: FAILED tests/test_grdtrack.py::test_grdtrack_input_csvfile_and_ncfile - AssertionError: FAILED tests/test_grdview.py::test_grdview_grid_dataarray FAILED tests/test_grdview.py::test_grdview_grid_file_with_region_subset FAILED tests/test_grdview.py::test_grdview_with_perspective FAILED tests/test_grdview.py::test_grdview_with_perspective_and_zscale FAILED tests/test_grdview.py::test_grdview_with_perspective_and_zsize FAILED tests/test_grdview.py::test_grdview_with_cmap_for_image_plot FAILED tests/test_grdview.py::test_grdview_with_cmap_for_surface_monochrome_plot FAILED tests/test_grdview.py::test_grdview_with_cmap_for_perspective_surface_plot FAILED tests/test_grdview.py::test_grdview_on_a_plane FAILED tests/test_grdview.py::test_grdview_on_a_plane_with_colored_frontal_facade FAILED tests/test_grdview.py::test_grdview_with_perspective_and_zaxis_frame FAILED tests/test_grdview.py::test_grdview_surface_plot_styled_with_contourpen FAILED tests/test_grdview.py::test_grdview_surface_mesh_plot_styled_with_meshpen FAILED tests/test_grdview.py::test_grdview_on_a_plane_styled_with_facadepen FAILED tests/test_grdview.py::test_grdview_drapegrid_dataarray FAILED tests/test_legend.py::test_legend_entries FAILED tests/test_makecpt.py::test_makecpt_to_plot_grid FAILED tests/test_makecpt.py::test_makecpt_to_plot_grid_scaled_with_series FAILED tests/test_makecpt.py::test_makecpt_truncated_to_zlow_zhigh FAILED tests/test_makecpt.py::test_makecpt_truncated_at_zlow_only FAILED tests/test_makecpt.py::test_makecpt_truncated_at_zhigh_only FAILED tests/test_makecpt.py::test_makecpt_reverse_color_only FAILED tests/test_makecpt.py::test_makecpt_reverse_zsign_only FAILED tests/test_makecpt.py::test_makecpt_reverse_color_and_zsign FAILED tests/test_makecpt.py::test_makecpt_continuous ====================================================================================================== 53 failed, 212 passed, 1 skipped in 94.31s (0:01:34) ======================================================================================================= --------------------------------------------------------------------------- AssertionError Traceback (most recent call last) in ----> 1 pygmt.test() ~/anaconda2/envs/pygmt/lib/python3.8/site-packages/pygmt/__init__.py in test(doctest, verbose, coverage, figures) 185 args.append(package) 186 status = pytest.main(args) --> 187 assert status == 0, "Some tests have failed." AssertionError: Some tests have failed. ```

System information

Please paste the output of python -c "import pygmt; pygmt.show_versions()":

 python -c "import pygmt; pygmt.show_versions()"                                                                                                                                                                                                ✭ 14:56:44
PyGMT information:
  version: v0.1.2
System information:
  python: 3.8.3 | packaged by conda-forge | (default, Jun  1 2020, 17:21:09)  [Clang 9.0.1 ]
  executable: /Users/locupe/anaconda2/envs/pygmt/bin/python
  machine: macOS-10.15.5-x86_64-i386-64bit
Dependency information:
  numpy: 1.18.5
  pandas: 1.0.5
  xarray: 0.15.1
  netCDF4: 1.5.3
  packaging: 20.4
  ghostscript: 9.22
  gmt: 6.1.0
GMT library information:
  binary dir: /Users/locupe/anaconda2/envs/pygmt/bin
  cores: 12
  grid layout: rows
  library path: /Users/locupe/anaconda2/envs/pygmt/lib/libgmt.dylib
  padding: 2
  plugin dir: /Users/locupe/anaconda2/envs/pygmt/lib/gmt/plugins
  share dir: /Users/locupe/anaconda2/envs/pygmt/share/gmt
  version: 6.1.0
welcome[bot] commented 4 years ago

👋 Thanks for opening your first issue here! Please make sure you filled out the template with as much detail as possible. You might also want to take a look at our contributing guidelines and code of conduct.

weiji14 commented 4 years ago

Hi @lhoupert, thanks for reporting this issue and filling up the template in such detail! We're aware of the 53 test failures, and you'll notice that most of them are grd* related. It's to do with the change in the default earth_relief grids from gridline registered to pixel registered when going from GMT 6.0 to 6.1 (our tests were built on GMT 6.0). See also https://forum.generic-mapping-tools.org/t/about-pygmt-test/598 and the disclaimer on https://forum.generic-mapping-tools.org/t/pygmt-v0-1-2-released/629/1.

We're working on a fix at #507, but in the meantime, you have a few options:

  1. Stay on GMT 6.1, ignore the test failures, and wait for the bugfix to come in v0.2.0.
  2. Downgrade to GMT 6.0, which will mean no test failures, but do realize that there are some issues with this (see point below).

Note that PyGMT incorrectly assumes all xarray grids to be gridline registered with Cartesian coordinates by default (rather than pixel registered with Geographic coordinates). If you're plotting grids, I would strongly recommend passing them in as filenames (e.g. climatedata.nc) instead of as xarray.DataArray grids at the moment. You may also be interested in reading the discussion at #487 to find out more. Let us know if you need more clarification.

lhoupert commented 4 years ago

Thank you @weiji14 for your quick reply!

If I stay with my current version GMT 6.1.0, does it mean I will not be able to use the grd* function?

I would like to run the code below in pygmt, is it possible? 

topo_grd="@earth_relief_06m.grd"
gmt grd2cpt $topo_grd -Cglobe -L-500/7000 -T-500/7000/20 -Z > topo.cpt
weiji14 commented 4 years ago

If I stay with my current version GMT 6.1.0, does it mean I will not be able to use the grd* function?

You can still use it, it should be okay if you pass in filenames as input, rather than xarray grids (which has buggy behaviour). I.e. grdimage("earth_relief_06m.grd") is good, grdimage(xr.open_dataarray("earth_relief_06m.grd")) is bad.

I would like to run the code below in pygmt, is it possible?

topo_grd="@earth_relief_06m.grd"
gmt grd2cpt $topo_grd -Cglobe -L-500/7000 -T-500/7000/20 -Z > topo.cpt

Well, we haven't implemented grd2cpt yet, only makecpt. I'd be keen to see it in PyGMT though, would you mind opening a feature request for it? :smile:

lhoupert commented 4 years ago

Great thank you I will explore pygmt for a little bit before asking new features :-D

weiji14 commented 4 years ago

Hi @lhoupert, we've just released PyGMT v0.2.0 (see https://forum.generic-mapping-tools.org/t/pygmt-v0-2-0-released/879). Sorry that this took a while, but the test failures should be gone now, and the xarray grid plotting should more or less work (but do upgrade to GMT 6.1.1 first).

Feel free to open up other feature requests/bug reports if you see that something is amiss. Have a great day :smile:

lhoupert commented 4 years ago

Great! Thank you for your work on this. I will give it another try when I am back on pygmt!

Le sam. 12 sept. 2020 à 22:31, Wei Ji notifications@github.com a écrit :

Hi @lhoupert https://github.com/lhoupert, we've just released PyGMT v0.2.0 (see https://forum.generic-mapping-tools.org/t/pygmt-v0-2-0-released/879). Sorry that this took a while, but the test failures should be gone now, and the xarray grid plotting should more or less work (but do upgrade to GMT 6.1.1 first).

Feel free to open up other feature requests/bug reports if you see that something is amiss. Have a great day 😄

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