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Genetalks / gtz

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
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'gtz -c' doesn't work #29

Closed piroonj closed 3 years ago

piroonj commented 3 years ago

Hi I have tried 'gtz file.gz -c' and I got output as file (file.gz.gtz). Indeed, the gtz program should print in stdout. Would you like to investigate this issue? I used gtz version: PROFESSIONAL-3.0.0-V-2020-12-09 01:58:41.

Best regards, Piroon

superligen commented 3 years ago

Hi Piroon, Technically, GTZ files are designed to support high-speed data writes, and the file structure is defined to allow parallel read and write, much like a file in HDF5 format, which makes the write process requires seek operations and therefore does not support stdout. Thank you for your feedback on this issue, but unfortunately this feature is not possible at this time. But decompression can be output to stdout. ( gtz -c -d ....) @徐霞丽Any additional comments? Gen

发件人：piroonj notifications@github.com 发送时间：2021年1月13日(星期三) 16:23 收件人：Genetalks/gtz gtz@noreply.github.com 抄　送：Subscribed subscribed@noreply.github.com 主　题：[Genetalks/gtz] 'gtz -c' doesn't work (#29)

Hi I have tried 'gtz file.gz -c' and I got output as file (file.gz.gtz). Indeed, the gtz program should print in stdout. Would you like to investigate this issue? I used gtz version: PROFESSIONAL-3.0.0-V-2020-12-09 01:58:41. Best regards, Piroon — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.

piroonj commented 3 years ago

Thank you for your quick response. I see.
Best, Piroon