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GenoML / genoml2

GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
Apache License 2.0
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Feature Request: skip SNP pruning. #6

Closed mikeDTI closed 4 years ago

mikeDTI commented 4 years ago

Please make sure that this is a feature request.

System information

Describe the feature and the current behavior/state. Everything is great but maybe we should include a CLI option to skip SNP pruning. You could see how this would be important for investigating a single genomic region in detail.

Will this change the current api? How? One more CLI option in munge.

Who will benefit with this feature? People interested in granular / preselected genetic features.

Any Other info. You are cool dudes.

m-makarious commented 4 years ago

Ask and you shall receive 🙏 😉 This was a highly requested feature by @mikeDTI , @h-leonard , and @ffaghri1 - and it's finally here!

Now users at the munging phase can use the --skip_prune flag (options are "yes" or "no"; default is "no") README has been modified accordingly.

Let me know if there are further issues with this!

mikeDTI commented 4 years ago

Big time productivity flex 💪

On Tue, Jul 14, 2020 at 8:06 PM Mary B. Makarious notifications@github.com wrote:

Closed GenoML/genoml#21 https://github.com/GenoML/genoml/issues/21.

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m-makarious commented 4 years ago

Moved issue to new repo for completeness and consistency