Use Gustavo's better substitution matrix for the MSA step

Genome-of-Melody / chantlab_backend

ChantLab development is being spun off into the Genome of Melody project. NOTE: Use mafft<=7.505!

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Closed hajicj closed 2 months ago

hajicj commented 2 months ago

Part of #1

The matrix is passed to mafft via the --textmatrix argument. See the divtime_christmas repo, step 00_tree_inference.

lanzv commented 2 months ago