I have another error running TAMA ORF prediction pipeline on a different annotation file.
This was the exact error and command run:
python /opt/tama/tama_go/orf_nmd_predictions/tama_orf_blastp_parser.py -b blastp_ensembl_rslt.txt -o blastp_ensembl_rslt_parsed.txt -f ensembl
opening blastp file
opening blastp file
Traceback (most recent call last):
File "/opt/tama/tama_go/orf_nmd_predictions/tama_orf_blastp_parser.py", line 425, in <module>
q_frame = q_name_split[-7]
IndexError: list index out of range
Sorry for the late response. This typically happens when there is a formatting issue in the blastp output. Can you copy paste hat line to also show hidden characters?
Hi Richard,
I have another error running TAMA ORF prediction pipeline on a different annotation file.
This was the exact error and command run:
Any idea on how to fix this?
Thank you! Cen