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GenomeRIK / tama

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
GNU General Public License v3.0
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tama_collapse.py error TypeError: a bytes-like object is required, not 'str' #105

Closed luckyvivi closed 10 months ago

luckyvivi commented 1 year ago

Hi, I'm running tama_collapse.py with python3 using this code⬇️ tama_collapse.py -b BAM -s polished.hq.bam -f GENOME.fa -x no_cap -e common_ends -p nocap_isoform > nocap_tama.collapse.log

And got an error ⬇️ Traceback (most recent call last): File "/usr/bin/tama_collapse.py", line 5095, in sam_file_contents = sam_file_list[0].split("\n") TypeError: a bytes-like object is required, not 'str'

could you please tell me how to fix this error, thanks in advance.

GenomeRIK commented 10 months ago

Hello,

Apologies but the github version of TAMA only runs on Python 2.7. If you need access to the python 3 version please email me.

Thank you, Richard