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GenomeRIK / tama

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
GNU General Public License v3.0
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output transcript in fasta #107

Closed Juniperlus closed 10 months ago

Juniperlus commented 1 year ago

Dear Colleagues,

I am wondering if we can output the collapsed transcripts sequences in "fasta" format along with the "bed" format.

Thank you

GenomeRIK commented 10 months ago

Hello,

At the moment this is not an option but you can easily convert the bed file into fasta using a standard bed12 to fasta convertor. Bedtools has one.

Thank you, Richard