I am running tama_cds_regions_bed_add.py with outputs generated from the pipeline. All outputs generated in the previous step seem to be in the same format as the manual describes but when I run tama_cds_regions_bed_add.py I am getting this error:
_Using default SJ distance of 50bp
opening blastp parse file
opening anno file
Going through sequences
Traceback (most recent call last):
File "/home/jc748673/tama/tama_go/orf_nmd_predictions/tama_cds_regions_bed_add.py", line 193, in
cds_rel_start = trans_len_dict[trans_id] - (nuc_end + posadjust - 2)
KeyError: 'G1;G1.1'
I tried using different versions of Python, etc but still getting the same error.
Hi,
I am running tama_cds_regions_bed_add.py with outputs generated from the pipeline. All outputs generated in the previous step seem to be in the same format as the manual describes but when I run tama_cds_regions_bed_add.py I am getting this error:
_Using default SJ distance of 50bp opening blastp parse file opening anno file Going through sequences Traceback (most recent call last): File "/home/jc748673/tama/tama_go/orf_nmd_predictions/tama_cds_regions_bed_add.py", line 193, in
cds_rel_start = trans_len_dict[trans_id] - (nuc_end + posadjust - 2)
KeyError: 'G1;G1.1'
I tried using different versions of Python, etc but still getting the same error.
Any ideas?
Many thanks! Roy.