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GenomeRIK / tama

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
GNU General Public License v3.0
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Error in TAMA merge #81

Closed anchonggen closed 2 years ago

anchonggen commented 2 years ago

Hi, I ran TAMA collapse successfully but failed to run TAMA merge with parameters “-a 300 -z 300 -m 30 -d merge_dup” and the error was shown below. 下载 下载 (1)

Could you please share your thoughts on what could be wrong here?

Thanks a lot!

GenomeRIK commented 2 years ago

Hello,

Thank you for using TAMA.

The issue here is that you are using the same source naming for each of the input annotation files.

You should have a unique source name in the filelist file for each bed file. I recommend naming each after the tissue as per the name of the bed file.

For example: blood.bed capped 1,1,1 blood feliver.bed capped 1,1,1 feliver felung.bed capped 1,1,1 felung kidney.bed capped 1,1,1 kidney

Let me know if that does not work.

Thank you, Richard

anchonggen commented 2 years ago

Thank you, Richard. The problem has been resolved.