I was using TAMA to collapse ONT data (code: python2 /datapool/3.software/tama/tama_collapse.py -s $inp_sorted_sam -f $ref_genome -p $output_prefix -x no_cap) after mapping to genome with minimap2 (code: minimap2 -t $thread -ax splice -uf -k 14 $ref_genome $inp_fa > $output) and sorting using samtools (code: samtools sort $sam -o $sorted_sam), while error occurred:
Traceback (most recent call last):
File "/datapool/3.software/tama/tama_go/format_converter/tama_convert_bed_gtf_ensembl_no_cds.py", line 92, in
t_start = line_split[1]
IndexError: list index out of range
I ran it successfully with PacBio data, so I think it was correctly installed. Could you tell me how to fix it?
Hi,
I was using TAMA to collapse ONT data (code: python2 /datapool/3.software/tama/tama_collapse.py -s $inp_sorted_sam -f $ref_genome -p $output_prefix -x no_cap) after mapping to genome with minimap2 (code: minimap2 -t $thread -ax splice -uf -k 14 $ref_genome $inp_fa > $output) and sorting using samtools (code: samtools sort $sam -o $sorted_sam), while error occurred:
Traceback (most recent call last): File "/datapool/3.software/tama/tama_go/format_converter/tama_convert_bed_gtf_ensembl_no_cds.py", line 92, in
t_start = line_split[1]
IndexError: list index out of range
I ran it successfully with PacBio data, so I think it was correctly installed. Could you tell me how to fix it?
Best, Wei