To be honest, I need to take a deeper look into ExonGenomicCoordsMapper and associated tests. Don't look too closely at this. I'll be working on this later. I'm going to ask @jarbesfeld to help ensure that tests are accurate.
I left in some TODOs in test_get_longest_compatible_transcript. I will make a separate issue for these.
Fix TypeError in SeqRepoAccess.get_reference_sequence() when start is not provided
Requires both start and end positions to be provided (get_mane_transcript and get_inter_residue_pos)
close #176 and #225
Notes:
ExonGenomicCoordsMapperand associated tests. Don't look too closely at this. I'll be working on this later. I'm going to ask @jarbesfeld to help ensure that tests are accurate.test_get_longest_compatible_transcript. I will make a separate issue for these.SeqRepoAccess.get_reference_sequence()whenstartis not providedget_mane_transcriptandget_inter_residue_pos)