Closed korikuzma closed 1 month ago
We should add the ability to return a list of MANE gene(s) given accession + start/end positions.
VarCat/Variation Normalizer needs the ability to get gene(s) from location coordinates. First pass will be getting MANE genes.
Add get_mane_genes argument to g_to_grch38. The minimum information we need is NCBI ID, HGNC ID, and gene symbol.
get_mane_genes
g_to_grch38
See this gene-normalizer issue.
No response
Yes, I can create a PR for this feature.
Feature description
We should add the ability to return a list of MANE gene(s) given accession + start/end positions.
Use case
VarCat/Variation Normalizer needs the ability to get gene(s) from location coordinates. First pass will be getting MANE genes.
Proposed solution
Add
get_mane_genesargument tog_to_grch38. The minimum information we need is NCBI ID, HGNC ID, and gene symbol.Alternatives considered
See this gene-normalizer issue.
Implementation details
No response
Potential Impact
No response
Additional context
No response
Contribution
Yes, I can create a PR for this feature.