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GenomicMedLab / cool-seq-tool

https://coolseqtool.readthedocs.io
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Ensembl back alignment data #87

Open korikuzma opened 2 years ago

korikuzma commented 2 years ago

@ahwagner when talking about #76 :

7:140,485,608, which aligns directly adjacent to ENST00000644969.2_6 / NM_001374258.1 (browser view). Note that the RefSeq identifier is the same, and the Ensembl identifier has a trailing _6, indicating it is the sixth version of the back-alignment of ENST00000644969.2 to GRCh37 provided by ENSEMBL

We currently do not have any back alignment data. Ensembl has been a constant issue when querying UTA db. We should look into this. #4 is similar

ahwagner commented 2 years ago

Also https://github.com/biocommons/uta/issues/233. Yeah, we should look into it. But don't let that block #76; let's get that one completed (without ENST support) and then come back to this issue.

github-actions[bot] commented 4 months ago

This issue is stale because it has been open 45 days with no activity. Please make a comment for triaging or closing the issue.