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GenomicsAotearoa / dbNSFP_build

Docker container to download dbNSFP 'database' and wrangle it into a format suitable for pipeline annotation process
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Fix AWK in hg19 #1

Open jduckles opened 5 years ago

jduckles commented 5 years ago

@sirselim has found a bug in the hg19 workflow that he plans to fix.

sirselim commented 5 years ago

The bug could be traced to a slight change in the underlying data structure between dbNSFP versions which 'broke' the existing awk argument. I have fixed this with an updated awk function which should be more flexible to any potential future updates. I will commit this fix after some additional testing.

However, there is another issue that arises, this is to do with positions that vary between genome builds. I will open a separate issue to detail this.