DininduSenanayake
commented
1 year ago Done :)
$ module load gfastats/1.3.6-GCC-11.3.0
$ gfastats --version
gfastats v1.3.6
Giulio Formenti giulio.formenti@gmail.com
$ gfastats --help
gfastats input.[fasta|fastq|gfa][.gz] [expected genome size] [header[:start-end]]
genome size: estimated genome size for NG* statistics (optional).
header: target specific sequence by header, optionally with coordinates (optional).
Options:
-a --agp-to-path <file> converts input agp to path and replaces existing paths.
-b --out-coord a|s|c|.....
add gfastats as a module (latest version)