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GenomicsAotearoa / long-read-assembly

Long-read assembly workshop
https://genomicsaotearoa.github.io/long-read-assembly/
GNU General Public License v3.0
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cutadapt install #11

Closed DininduSenanayake closed 1 year ago

DininduSenanayake commented 1 year ago

cutadapt install as a module

DininduSenanayake commented 1 year ago

Few different options are available as modules 

$ module spider cutadapt 

    Description:
      cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when
      sequencing microRNAs. 

     Versions:
        cutadapt/1.16-gimkl-2017a-Python-3.6.3
        cutadapt/1.16-gimkl-2018b-Python-3.7.3
        cutadapt/2.3-gimkl-2018b-Python-3.7.3
        cutadapt/2.10-gimkl-2020a-Python-3.8.2
        cutadapt/3.3-gimkl-2020a-Python-3.8.2
        cutadapt/3.5-gimkl-2020a-Python-3.8.2
        cutadapt/4.1-gimkl-2022a-Python-3.10.5
 module load cutadapt/4.1-gimkl-2022a-Python-3.10.5

$ cutadapt --help
cutadapt version 4.1

Copyright (C) 2010-2022 Marcel Martin <marcel.martin@scilifelab.se>

cutadapt removes adapter sequences from high-throughput sequencing reads.

Usage:
    cutadapt -a ADAPTER [opt..