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GenomicsAotearoa / long-read-assembly

Long-read assembly workshop
https://genomicsaotearoa.github.io/long-read-assembly/
GNU General Public License v3.0
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Nanocomp install #13

Closed DininduSenanayake closed 1 year ago

DininduSenanayake commented 1 year ago

Nanocomp install

DininduSenanayake commented 1 year ago

NanoComp module added with NanoPlot 

$ module load NanoComp/1.20.0-gimkl-2022a-Python-3.10.5

$ Nano
NanoComp  NanoPlot  

$ NanoComp --help
usage: NanoComp [-h] [-v] [-t THREADS] [-o OUTDIR] [-p PREFIX] [--verbose] [--raw] [--store] [--tsv_stats] [--make_no_static] [--readtype {1D,2D,1D2}] [--maxlength N] [--minlength N] [--barcoded] [--split_runs TSV_FILE]
                [-f [{png,jpg,jpeg,webp,svg,pdf,eps,json} ...]] [-n names [names ...]] [-c colors [colors ...]] [--plot {violin,box,ridge,false}] [--title TITLE] [--dpi DPI]
                (--fasta file [file ...] | --fastq files [files ...] | --fastq_rich file [file ...] | --summary files [files ...] | --bam files [files ...] | --ubam file [file ...] | --cram file [file ...] | --pickle file [file ...] | --feather file [file ...])