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GenomicsAotearoa / long-read-assembly

Long-read assembly workshop
https://genomicsaotearoa.github.io/long-read-assembly/
GNU General Public License v3.0
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Liftoff install and test #15

Closed DininduSenanayake closed 1 year ago

DininduSenanayake commented 1 year ago

Liftoff install and test https://github.com/agshumate/Liftoff

DininduSenanayake commented 1 year ago 
$ module load Liftoff/1.6.3.2-gimkl-2022a-Python-3.11.3 

$ liftoff --help
usage: liftoff [-h] (-g GFF | -db DB) [-o FILE] [-u FILE] [-exclude_partial] [-dir DIR] [-mm2_options =STR] [-a A] [-s S] [-d D] [-flank F] [-V] [-p P] [-m PATH] [-f TYPES] [-infer_genes] [-infer_transcripts] [-chroms TXT]
               [-unplaced TXT] [-copies] [-sc SC] [-overlap O] [-mismatch M] [-gap_open GO] [-gap_extend GE] [-polish] [-cds]
               target reference