Software Checklist

[DininduSenanayake]

• [x] Seqkit #8
• [x] CutAdapt #11
• [x] Nanocomp #13
• [x] Best #5
• [x] Verkko 1.3.1 #1
• [x] Hifiasm (latest) #4
• [x] Yak (latest) #9
• [x] mashmap (including [generatedotplot] #7 (https://github.com/marbl/MashMap/blob/master/scripts/generateDotPlot))
• [x] meryl #6
• [x] Merqury (https://github.com/marbl/merqury) #6
• [x] Winnowmap #3
• [x] gfastats #10
• [x] minimap2 & k8 (for asmgene) #12
• [x] FCS #14
  • This tool is a bit odd, you don't really install it you just download the runner script. The runner script reads in arguments and decides which Docker command to run. (So the take home is that we just need to be able to run either Docker or Singularity)
  • [x] Liftoff #15
  • [x] ModDotPlot #16

[juklucas]

Could you please also install

• ModDotPlot
• Liftoff

[DininduSenanayake]

@juklucas LIftoff is ready as per #15

[DininduSenanayake]

@juklucas ModDotPlot is ready as per #16