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GenomicsAotearoa / long-read-assembly

Long-read assembly workshop
https://genomicsaotearoa.github.io/long-read-assembly/
GNU General Public License v3.0
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Winnowmap module build #3

Closed DininduSenanayake closed 1 year ago

DininduSenanayake commented 1 year ago

Ready :)

$ module load Winnowmap/2.03-GCC-11.3.0

$ winnowmap --help
winnowmap is built on top of minimap2, while modifying its minimizer sampling and indexing procedures
Usage: winnowmap [options] <target.fa>|<target.idx> [query.fa] [...]
Options:
  Indexing:
    -H           use homopolymer-compressed k-mer
    -k INT       k-mer size (no larger than 28) [15]
    -w......