MetaBAT/2.17 `jgi_summarise_bam_contig_depth` produces nonsensical outputs

GenomicsAotearoa / metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber

https://genomicsaotearoa.github.io/metagenomics_summer_school/

GNU General Public License v3.0

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MetaBAT/2.17 `jgi_summarise_bam_contig_depth` produces nonsensical outputs #54

Open JSBoey opened 3 months ago

JSBoey commented 3 months ago

Outputs have coverage values exceeding library size of the sample and even negative coverage. There is a fix coming through by the devs but is not yet implemented in a stable release.