4 - Assembly evaluation

GenomicsAotearoa / metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber

https://genomicsaotearoa.github.io/metagenomics_summer_school/

GNU General Public License v3.0

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4 - Assembly evaluation #65

Closed kmhandley closed 2 months ago

kmhandley commented 2 months ago

I suggest deleting the Limitations box. Because 16S is highly conserved, EMIRGE is pretty good at recovering novel sequences.

Also there are other options for taxa identification available that take into account novelty based on metagenomic data, e.g. GTDB-Tk classification of MAGs.

kmhandley commented 2 months ago

PS That is delete the limitations box under "Reconstruct rRNA using PhyloFlash-EMIRGE".

Also, in the text above change "16S" to "16S and 18S"

JSBoey commented 2 months ago

Box removed and added 16S and 18S to text