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GenomicsAotearoa / metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
https://genomicsaotearoa.github.io/metagenomics_summer_school/
GNU General Public License v3.0
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4 - Assembly evaluation (part 2) #66

Closed kmhandley closed 3 months ago

kmhandley commented 3 months ago

Everything ran well. For metaquast, as viewing affects more than just the report.html file, it may be helpful for the entire output directory to be compressed and then downloaded.

Add this line of code after the sbatch script or to the end of the sbatch script:

tar -cvzf metaquast_results.tar.gz metaquast_results

Then in the Viewing HTML in Jupyter Hub box change the text from "To view a basic version of the report, download the report file by navigating to the 4.evaluation/metaquast_results/ folder, right-click report.html/ and select download." to "To view a basic version of the report, download the report file by navigating to the 4.evaluation/metaquast_results.tar.gz/ folder, right-click and select download."

JSBoey commented 3 months ago

Added archiving and download instructions