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GenomicsDB / GenomicsDB-R

Experimental R bindings to the native GenomicsDB library
GNU General Public License v2.0
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missing .h files? #14

Closed yg2537 closed 8 months ago

yg2537 commented 1 year ago

Tyring to compile the GenomicsDB-R with below error:

checking for /home/marissa/include/genomicsdb.h... no configure: error: GenomicsDB include files not found ERROR: configuration failed for package ‘genomicsdb’

is that due to the .h files is mssing in src folder?

Thanks!

nalinigans commented 1 year ago

As mentioned in the README, these bindings are only for queries and you will have to build/install GenomicsDB first, you can follow instructions here - https://github.com/GenomicsDB/GenomicsDB/tree/master/scripts. That said, it's been awhile since we looked at the R bindings and things may be out of sync with the main GenomicsDB branch.

@yg2537, can you wait a day or two for us to take a look and update the bindings to make it usable? Thanks.

nalinigans commented 8 months ago

Closing this for now. Please let me know if you still find issues with using the bindings. Thanks.