Closed ramonawalls closed 3 years ago
(From Chris H) FAANG = Functional Annotation of ANimal Genomes, their aims are on their website https://www.faang.org/
They use many (almost all) of the same terms that SRA (and us) use. This is the Github repo of the metadata standards (rules): https://github.com/FAANG/dcc-metadata e.g. the samples rules: https://github.com/FAANG/dcc-metadata/blob/master/rulesets/faang_samples.metadata_rules.json
The rules are also shown on their portal, which is auto generated/updated from the above github pages: e.g. https://data.faang.org/ruleset/samples#standard they also allow users to download excel templates directly from that page
They have a validator tool currently in perl but are very close to releasing a python version. https://github.com/FAANG/dcc-validate-metadata https://github.com/FAANG/dcc-validate-metadata/tree/new_python_validator
They also have a data portal (https://data.faang.org/home) which collects all the public BioSamples from the BioSamples repository at EBI that are labeled with a specific metadata field (Project=FAANG). The code to generate the portal is also available in github: https://github.com/FAANG/dcc-portal-backend https://github.com/FAANG/dcc-portal-frontend
No longer needed.
ramonawalls
commented
3 years ago
(From Chris H) FAANG = Functional Annotation of ANimal Genomes, their aims are on their website https://www.faang.org/
They use many (almost all) of the same terms that SRA (and us) use. This is the Github repo of the metadata standards (rules): https://github.com/FAANG/dcc-metadata e.g. the samples rules: https://github.com/FAANG/dcc-metadata/blob/master/rulesets/faang_samples.metadata_rules.json
The rules are also shown on their portal, which is auto generated/updated from the above github pages: e.g. https://data.faang.org/ruleset/samples#standard
they also allow users to download excel templates directly from that page
They have a validator tool currently in perl but are very close to releasing a python version. https://github.com/FAANG/dcc-validate-metadata https://github.com/FAANG/dcc-validate-metadata/tree/new_python_validator
They also have a data portal (https://data.faang.org/home) which collects all the public BioSamples from the BioSamples repository at EBI that are labeled with a specific metadata field (Project=FAANG). The code to generate the portal is also available in github: https://github.com/FAANG/dcc-portal-backend
https://github.com/FAANG/dcc-portal-frontend