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Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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Update definitions to include Disease Ontology usage #164

Closed only1chunts closed 3 years ago

only1chunts commented 3 years ago

Additional context

The terms listed below are human associated package items that have all had the relevant Human Disease Ontology (DO) usage added to the definitions:

Current term details

Term name - lung/pulmonary disorder
Term ID - MIXS:0000269
Structured comment name - pulmonary_disord
Definition - History of pulmonary disorders; can include multiple disorders.

Suggested update(s)

Term name - lung/pulmonary disorder
Term ID - MIXS:0000269
Structured comment name - pulmonary_disord
**Definition - History of pulmonary disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850).**

Current term details

Term name - lung/nose-throat disorder
Term ID - MIXS:0000270
Structured comment name - nose_throat_disord
Definition - History   of nose-throat disorders; can include multiple disorders

Suggested update(s)

Term name - lung/nose-throat disorder
Term ID - MIXS:0000270
Structured comment name - nose_throat_disord
**Definition - History of nose-throat disorders; can include multiple disorders,  The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974).**

Current term details

Term name - blood/blood disorder
Term ID - MIXS:0000271
Structured comment name - blood_blood_disord
Definition - History of blood disorders; can include multiple disorders

Suggested update(s)

Term name - blood/blood disorder
Term ID - MIXS:0000271
Structured comment name - blood_blood_disord
**Definition - History of blood disorders; can include multiple disorders.  The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, hematopoietic system disease (https://disease-ontology.org/?id=DOID:74).**

Current term details

Term name - urine/kidney disorder
Term ID - MIXS:0000277
Structured comment name - kidney_disord
Definition - History of kidney disorders; can include multiple disorders

Suggested update(s)

Term name - urine/kidney disorder
Term ID - MIXS:0000277
Structured comment name - kidney_disord
**Definition - History of kidney disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, kidney disease (https://disease-ontology.org/?id=DOID:557). **

Current term details

Term name - urine/urogenital tract disorder
Term ID - MIXS:0000278
Structured comment name - urogenit_tract_disor
Definition - History of urogenitaltract disorders; can include multiple disorders

Suggested update(s)

Term name - urine/urogenital tract disorder
Term ID - MIXS:0000278
Structured comment name - urogenit_tract_disor
**Definition - History of urogenital tract disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, urinary system disease (https://disease-ontology.org/?id=DOID:18). **

Current term details

Term name - gastrointestinal tract disorder
Term ID - MIXS:0000280
Structured comment name - gastrointest_disord
Definition - History of gastrointestinal tract disorders; can include multiple disorders

Suggested update(s)

Term name - gastrointestinal tract disorder
Term ID - MIXS:0000280
Structured comment name - gastrointest_disord
**Definition - History of gastrointestinal tract disorders; can include multiple disorders. History of blood disorders; can include multiple disorders.  The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77).**

Current term details

Term name - liver disorder
Term ID - MIXS:0000282
Structured comment name - liver_disord
Definition - History of liver disorders; can include multiple disorders

Suggested update(s)

Term ID - MIXS:0000282
Structured comment name - liver_disord
**Definition - History of liver disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, liver disease (https://disease-ontology.org/?id=DOID:409).**

Current term details

Term name - nose/mouth/teeth/throat disorder
Term ID - MIXS:0000283
Structured comment name - nose_throat_disord
Definition - History of nose/mouth/teeth/throat disorders; can include multiple disorders

Suggested update(s)

Term name - nose/mouth/teeth/throat disorder
Term ID - MIXS:0000283
Structured comment name - nose_throat_disord
**Definition - History of nose/mouth/teeth/throat disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091), or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974).**

Current term details

Term name - dermatology disorder
Term ID - MIXS:0000284
Structured comment name - dermatology_disord
Definition - History of dermatology disorders; can include multiple disorders

Suggested update(s)

Term name - dermatology disorder
Term ID - MIXS:0000284
Structured comment name - dermatology_disord
**Definition - History of dermatology disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, skin disease (https://disease-ontology.org/?id=DOID:37).**

Current term details

Term name - gynecological disorder
Term ID - MIXS:0000288
Structured comment name - gynecologic_disord
Definition - History of gynecological disorders; can include multiple disorders

Suggested update(s)

Term name - gynecological disorder
Term ID - MIXS:0000288
Structured comment name - gynecologic_disord
**Definition - History of gynecological disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, female reproductive system disease (https://disease-ontology.org/?id=DOID:229).**

Current term details

Term name - urogenital disorder
Term ID - MIXS:0000289
Structured comment name - urogenit_disord
Definition - History of urogenital disorders, can include multiple disorders

Suggested update(s)

Term name - urogenital disorder
Term ID - MIXS:0000289
Structured comment name - urogenit_disord
**Definition - History of urogenital disorders, can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary system disease (https://disease-ontology.org/?id=DOID:18). **
only1chunts commented 3 years ago

all definitions updated in MIxs6 packages - to edit sheet. Added to update log.