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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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host of the symbiont taxid [MIXS:0001306]- for Symbiont-associated (SA) package #184

Open only1chunts opened 3 years ago

only1chunts commented 3 years ago

New term details

Term name - host of the symbiont taxid
Structured comment name -symb_host_taxid
Definition - NCBI taxon id of the host of the symbiotic organism.
Expected value - NCBI taxon identifier of the host of the symbiotic organism
Value syntax - {integer}
Example - 145637
Packages(s) - symbiont-assiociated

Additional context Term created as part of Symbiont associated package.

only1chunts commented 3 years ago

same question for this as for other taxonomy fields, do we want to restrict it to NCBI only? see #128 , which is flagged for discussion for v7 release. I suggest for now we leave this term as it is and review in v7 along with other taxonomy ID terms.

ndheilly commented 3 years ago

more than OK. we do not want to restrict to NCBI :-)

ramonawalls commented 3 years ago

Update as per agreed-upon pattern.

Term name - host of the symbiotic host taxon id
Term ID - MIXS:0001306
Structured comment name -host_of_host_taxid
Definition - NCBI taxon id of the host of the symbiotic host organism.
Expected value - NCBI taxon identifier of the host of the symbiotic taxon organism
Value syntax - {integer}
Example - 145637
Packages(s) - symbiont-assiociated

spreadsheet updated

Leaving open until issue of NCBI only IDs is resolved.

only1chunts commented 3 years ago

Confirmed in MIxS v6 Term Updates sheet and included as New Term in v6 update log Also added labels for discussion in v7.