search

GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
Creative Commons Zero v1.0 Universal
36 stars 21 forks source link

broaden use of [MIXS:0001121] #212

Open only1chunts opened 3 years ago

only1chunts commented 3 years ago

Current term details

Term name - ecosystem(s) adjacent to farm
Structured comment name - adjacent_ecosystem
Definition - Description of the environmental features that are adjacent to the farm. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes.
Expected value - ENVO_01001110 or ENVO_00000070
Value syntax - {termLabel}{[termID]}
Example - estuarine biome [ENVO:01000020]
Term ID - MIXS:0001121
Package(s) - Food

Does this term have to be specific to just Farms? Would it be possible to expand the definition to include the environments adjacent to any sampling site?

Suggested update(s)

Term ID - MIXS:0001121
Term name - ecosystem(s) adjacent to sampling site
Definition - Description of the environmental features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes.

Additional context This term is proposed in the set of 147 terms for the Food packages #201

lschriml commented 3 years ago

It could be broadened.

ramonawalls commented 3 years ago

More discussion needed relative to other environmental terms using ENVO.

Just want to know what is next door.

See if someone from food package can join call in two weeks.

ramonawalls commented 3 years ago

Suggested changes:

Term name - environment adjacent to site Structured comment name - adjacent_environment Definition - Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes. Expected value - ENVO_01001110 or ENVO_00000070 Value syntax - {termLabel}{[termID]} Example - estuarine biome [ENVO:01000020] Term ID - MIXS:0001121 Package(s) - Food

Reach out to Chris Grim to see if they have more specific definition of adjacency. Touching the property (neighboring), within 5 miles, in the same county?

only1chunts commented 2 years ago

I think this can be refined further in v7, but for now in v6 I am making the suggested changes as listed above by @ramonawalls . v6 spreadsheet updated in both food and ag packages, added to v6 change log