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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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Ag package term suggestion species_pathogen MIXS:0001297 #224

Closed only1chunts closed 2 years ago

only1chunts commented 3 years ago

New term details

Term name - species of pathogen
Term ID - MIXS:0001297
Structured comment name - species_pathogen
Definition - This is the species-level taxonomic name of an organism playing a pathogen role
Expected value - 
Value syntax - 
Example - 
Package(s) - Agriculture

Additional context Suggested as part of the Ag package

Points for discussion

I think we have defined a better term for this within the SA package that we should re-use here - "observed host symbionts" MIXS:0001309

only1chunts commented 3 years ago

CIG agree term not required, so not adding it for Ag package

jpdundorearias commented 3 years ago

thanks @only1chunts. Can you please clarify what "CIG agree term not required, so not adding it for Ag package" means? If there is a better terms referring to an organism identified as responsible for causing disease ("playing a pathogen role") please feel free to suggest. Also, would this term allow the genus of the pathogen be added in cases where species have not been identified (ex: Pythium spp)?

only1chunts commented 2 years ago

replaced "species_pathogen" with Symbiont associated package term "observed host symbionts" [MIXS:0001309]. Change made in spreadsheet, no need for change log as it's a new term that is now not being created.