Urobiome package term suggestion comorbidities

GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification

https://w3id.org/mixs

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Urobiome package term suggestion comorbidities #273

Open only1chunts opened 2 years ago

only1chunts commented 2 years ago

New term details

Term name - relevant medical comorbidities
Structured comment name - comorbidities
Definition - Relevant medical comorbidities, suggested ontology: HPO https://hpo.jax.org/
Expected value -  free text
Value syntax - {boolean}{text};{termLabel} {[termID]}
Example - yes; Recurrent skin infections [HP:0001581]
Preferred unit - 
Package - Urobiome

Additional context Suggested as part of the Urobiome package.

lakarstens commented 1 year ago

Update to HDO rather than HPO; add to definition about comorbidity vs primary disease

only1chunts commented 1 year ago

multiple values allowed (occurence=m) Definition should probably include how the primary condition should be captured, i.e. what is this term's value "co" with?