search

GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
Creative Commons Zero v1.0 Universal
38 stars 21 forks source link

Urobiome package term suggestion urine_ph #279

Open only1chunts opened 2 years ago

only1chunts commented 2 years ago

New term details

Term name - urine pH 
Structured comment name - urine_ph
Definition - pH as reported on urine dipstick testing or urinalysis
Expected value - value
Value syntax - {float} 
Example - 3.1
Preferred unit - 
Package - Urobiome

Additional context Suggested as part of the Urobiome package.

only1chunts commented 2 years ago

brief discussion at CIG call 25-Oct suggested that this would be better to use the generic "pH" term in combination with the "pH method" term as they both relate to the sample anyway, i.e. the sample is Urine so the term "pH" relates to the pH of the Urine sample. Additional discussion involved the possibility of including a "vaginal pH" term but that needs follow up.

lakarstens commented 2 years ago

The generic term "pH" in combination with "pH method" is sufficient (MIXS:0001001 and MIXS:0001106)

lakarstens commented 1 year ago

Add examples relevant to the urobiome community