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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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What does it mean to have an Excel file of MIxS 6 for partners like NCBI? #365

Closed turbomam closed 9 months ago

turbomam commented 2 years ago

I think @ramonawalls said she needs to share a Microsoft Excel representation of MIxS 6 with NCBI.

I tried to generate the LinkML Excel artifact, but that is just a collection of sheets, each of which models one class and has column headers for that class' slots.

That Excel generation isn't working anyway #360

Chris Mungall suggested using the new schema to schemasheets converter

turbomam commented 2 years ago

schema sheets export (incomplete)

https://linkml.io/schemasheets/intro/export/

turbomam commented 2 years ago

Is something equivalent in format to the MIxS 5 sheet required?

ramonawalls commented 2 years ago

Sorry for the delay. Been tied up in meetings since 5. Yes, what we need is an Excel workbook very similar to the MIxS4 and 5 releases. Two possible ways to generate it:

  1. Use the CSV files that are created by LinkML and and manually create the workbook.
  2. Copy the sheets from google sheets and manually construct the workbook.

I think either one should be okay, but I am a little concerned about method 2 diverging from the LinkML artifacts.

ramonawalls commented 9 months ago

It was agreed by all on the CIG (including people from INSDC) that the TSV release files are adequate.