Master issue for problematic enumerations

[turbomam]

These are LinkML permissible values containing a semicolon, indicative of a MIxS expected value in the pattern [a|b|c];something else

from linkml_runtime.utils.schemaview import SchemaView
mixs_file = "model/schema/mixs.yaml"
mixs_view = SchemaView(mixs_file)
mixs_enums = mixs_view.all_enums()

for ek, ev in mixs_enums.items():
    pvs = ev.permissible_values
    for pvk, pvv in pvs.items():
        if ';' in pvk:
            print(f"{ek}\t{pvk}")

Checkmark means that the bad permissible value has been tidied up, disconnected from the slot, and that the slot's range has been converted to a string with a regular expression pattern.

• [x] add_recov_method "other;{timestamp}" #345
• [x] #368
• [x] #369
• [x] #370
• [x] #372
• [x] #371
• [x] #373
• [x] #374

[turbomam]

many of these could still be improved by coming up with more explicit policies for use cases