Open turbomam opened 2 years ago
Are we talking about environments or organisms here?
See also https://en.wikipedia.org/wiki/Aerobic_organism
The INSDC biosample dataset (biosample_set.xml) has some numeric rel_to_oxygen
values... is a mapping possible?
"facultative" is a permissible value for
rel_to_oxygen
We assume that means "facultative anaerobe" but does it need to be clarified? There is some precedent for the phrase "facultative aerobe"
Are these two phrases just synonyms?
One motivation for this question is that both "facultative anaerobes" and "facultative anaerobes" can be found in the
rel_to_oxygen
column in https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz. BBOP/NMDC have a project to repair suspect values like that.There are other unexpected values for
rel_to_oxygen
in biosample_set.xml... how interested is this group in going over them?